Plant FIBer expression Database

Potri.003G106300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G31600 449 / 3e-159 AtTRM9 Arabidopsis thaliana tRNA methyltransferase 9, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3)
AT4G02485 75 / 2e-15 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
AT4G20350 49 / 2e-06 oxidoreductases (.1.2)
AT2G42890 42 / 0.0006 AML2, MEI2 MEI2-like 2 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G131200
[exp]
71 / 5e-14 AT4G02485 239 / 2e-79 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Potri.013G161600
[exp]
57 / 3e-09 AT4G20350 295 / 3e-101 oxidoreductases (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037263
[exp]
508 / 0 AT1G31600 459 / 4e-162 Arabidopsis thaliana tRNA methyltransferase 9, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3)
Lus10035676
[exp]
86 / 3e-18 AT1G31650 579 / 0.0 RHO guanyl-nucleotide exchange factor 14 (.1)
Lus10037635
[exp]
77 / 3e-16 AT4G02485 246 / 7e-83 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Lus10015618
[exp]
75 / 2e-15 AT4G02485 238 / 1e-79 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Lus10003687
[exp]
56 / 9e-09 AT4G20350 294 / 4e-101 oxidoreductases (.1.2)
Lus10028991
[exp]
53 / 1e-07 AT4G20350 283 / 5e-97 oxidoreductases (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0029 Cupin PF13532 2OG-FeII_Oxy_2 2OG-Fe(II) oxygenase superfamily
CL0221 RRM PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence
>Potri.003G106300.15 pacid=42784848 polypeptide=Potri.003G106300.15.p locus=Potri.003G106300 ID=Potri.003G106300.15.v4.1 annot-version=v4.1
ATGGGCGTCCCAAGATTCACACGGCCCAAAACACCGGCAACCGATTCACCAAGTCCTTATCTCTACGTAGCCAACTGTGGACCAGCGGTTGGGCTTTCTT
ATGACACAATTGCTTCCGTGTTTAACACCTTTGGACAGGTGAAAGGAATTTACGCAGCAGATGAAAGCGGAACACGTGTTATAGTTTCTTATTCCGAAGC
TAATTCTGCCCAACAAGCTCTTACTGCACTGAATGGGAAATCTTGTGCTGATCTTGGTGGCAGGTCTTTGCATATTCGGTATTCGGTTATTCAACCAAAT
TGCGAGGCTGAGAGCCAGCAGGTTAATGAACACATTCCTGTTTCACTGCTGGACTCGGAGGTTAATATTCCTGGGCTTTATTTGGTTCATGATTTTCTCA
GTCCTCAGGAAGAAAAGGAGTTACTGGCAGCAGTTGATGAAAGGCCTTGGATAGGTCTATCTAAAAGGAGGGTGCAGCATTATGGATATGAATTTTGTTA
CGGAACAAGGAATGTTGATACAAAACTGCATTTGGGTGAACTTCCATCATTTGTTTCTTCGGTACTTGAAAGGATTTCATTGTTTCCTGGCCTTAACAGT
TCTACAAGCATACTCTTGGACCAACTCACAGTAAACGAGTACCCACCTGGGGTGGGCTTGTCTCCACACATAGACACCCATTCTGCATTTGAGGGATTGA
TTTTTAGCCTTTCATTAGCAGGGCCTTGCATCATGGAGTTCAGGAGATACTTGGATGGTTCATGGGTTCCTGATGCTGCCTCTAGTGCTTATACAAAGGT
GGAAAATGTTGTCAACTGCTCAAATCTAGTAAGGAGGTCTCTCTATCTTCCTCCTCGGTCCATTCTTCTTTTATCTGGGGAAGCACGCTATGCTTGGCAA
CATTACATTCCACACCATAAGATTGACATGGTGAATCAAAGTGTGATCAGAAGGGGTGCAAGAAGGGTATCATTTACATTTCGTAAGGTACTTAGAGGTC
CTTGCCAATGTGAATTTCCACAATACTGTGATTCAGAAAGATAG
AA sequence
>Potri.003G106300.15 pacid=42784848 polypeptide=Potri.003G106300.15.p locus=Potri.003G106300 ID=Potri.003G106300.15.v4.1 annot-version=v4.1
MGVPRFTRPKTPATDSPSPYLYVANCGPAVGLSYDTIASVFNTFGQVKGIYAADESGTRVIVSYSEANSAQQALTALNGKSCADLGGRSLHIRYSVIQPN
CEAESQQVNEHIPVSLLDSEVNIPGLYLVHDFLSPQEEKELLAAVDERPWIGLSKRRVQHYGYEFCYGTRNVDTKLHLGELPSFVSSVLERISLFPGLNS
STSILLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGPCIMEFRRYLDGSWVPDAASSAYTKVENVVNCSNLVRRSLYLPPRSILLLSGEARYAWQ
HYIPHHKIDMVNQSVIRRGARRVSFTFRKVLRGPCQCEFPQYCDSER

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G31600 AtTRM9 Arabidopsis thaliana tRNA meth... Potri.003G106300
[exp]
0 1
AT1G63980 D111/G-patch domain-containing... Potri.003G132600
[exp]
3.46 0.6855
AT1G13030 sphere organelles protein-rela... Potri.008G185100
[exp]
14.00 0.7185
AT3G28410 F-box/RNI-like superfamily pro... Potri.017G146400
[exp]
18.76 0.6656
AT2G34900 GTE1, GTE01, IM... IMBIBITION-INDUCIBLE 1, GLOBAL... Potri.008G043000
[exp]
18.89 0.6696
AT4G27220 NB-ARC domain-containing disea... Potri.001G429660
[exp]
40.69 0.6593
AT3G14470 NB-ARC domain-containing disea... Potri.004G194800
[exp]
46.64 0.6442 RGA.63
Potri.002G100700
[exp]
52.96 0.6107
AT3G47160 RING/U-box superfamily protein... Potri.009G045400
[exp]
59.62 0.5812
AT2G19940 oxidoreductases, acting on the... Potri.004G145700
[exp]
61.95 0.6340
AT5G15640 Mitochondrial substrate carrie... Potri.004G117000
[exp]
64.89 0.5960

Potri.003G106300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.