Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31650 667 / 0 ATROPGEF14, ROPGEF14 RHO guanyl-nucleotide exchange factor 14 (.1) AT5G02010 346 / 1e-112 ATROPGEF7, ROPGEF7 RHO guanyl-nucleotide exchange factor 7 (.1) AT5G05940 343 / 1e-110 ATROPGEF5, ROPGEF5 ROP guanine nucleotide exchange factor 5 (.1) AT4G38430 338 / 2e-109 ATROPGEF1, ROPGEF1 rho guanyl-nucleotide exchange factor 1 (.1) AT4G00460 325 / 1e-105 ATROPGEF3, ROPGEF3 RHO guanyl-nucleotide exchange factor 3 (.1.2) AT3G24620 326 / 3e-105 ATROPGEF8, ROPGEF8 RHO guanyl-nucleotide exchange factor 8 (.1) AT1G79860 323 / 6e-104 ATROPGEF12, ROPGEF12, MEE64 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) AT4G13240 320 / 5e-103 ATROPGEF9, ROPGEF9 RHO guanyl-nucleotide exchange factor 9 (.1) AT3G16130 320 / 6e-102 PIRF2, ATROPGEF13, ROPGEF13 phytochrome interacting RopGEF 2, RHO guanyl-nucleotide exchange factor 13 (.1) AT1G01700 316 / 7e-102 ATROPGEF2, ROPGEF2 RHO guanyl-nucleotide exchange factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G127300 [exp] 970 / 0 AT1G31650 667 / 0.0 RHO guanyl-nucleotide exchange factor 14 (.1) Potri.008G062000 [exp] 352 / 5e-114 AT5G05940 664 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.006G092600 [exp] 351 / 1e-113 AT5G02010 676 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.010G196000 [exp] 345 / 3e-111 AT5G05940 659 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.009G140100 [exp] 343 / 4e-111 AT4G38430 715 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.004G179742 [exp] 341 / 2e-110 AT4G38430 729 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.005G247100 [exp] 338 / 1e-109 AT4G38430 553 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.002G159700 [exp] 334 / 6e-109 AT4G00460 662 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.014G084200 [exp] 330 / 3e-107 AT4G00460 673 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033282 [exp] 707 / 0 AT1G31650 645 / 0.0 RHO guanyl-nucleotide exchange factor 14 (.1) Lus10034742 [exp] 681 / 0 AT1G31650 634 / 0.0 RHO guanyl-nucleotide exchange factor 14 (.1) Lus10035676 [exp] 644 / 0 AT1G31650 579 / 0.0 RHO guanyl-nucleotide exchange factor 14 (.1) Lus10037260 [exp] 636 / 0 AT1G31650 563 / 0.0 RHO guanyl-nucleotide exchange factor 14 (.1) Lus10009874 [exp] 353 / 4e-115 AT5G05940 643 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10000399 [exp] 344 / 3e-111 AT5G05940 630 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10004676 [exp] 343 / 2e-110 AT5G05940 667 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10040248 [exp] 341 / 6e-110 AT5G05940 661 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10022601 [exp] 339 / 5e-108 AT5G02010 662 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10021500 [exp] 338 / 8e-108 AT5G02010 664 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03759 [poplar] [flax] PRONE PRONE (Plant-specific Rop nucleotide exchanger)
Representative CDS sequence Show only first row Show all	>Potri.003G106400.4 pacid=42785919 polypeptide=Potri.003G106400.4.p locus=Potri.003G106400 ID=Potri.003G106400.4.v4.1 annot-version=v4.1 ATGATGATGAGAAGATGGCTCGCTTGCTGCGCTAGGGACACAGAGATTAGCCTCGACTTTGATGAACAAGAGAGGATAATGACGTATAATGGCCTTGAGA GTTGCATTATAAACAACCAGTCTTACGAAAATGAAAGCGGGACAAGCAGAGGAGAGGGTTGTCTAAGCGAATCTTTCGACGATGATGGTTGTTCAAGCTG TTCTTCCAGCAAAGATGCTTTTGGGTCATTTTCATCTAAATGGTTGAGAACGAAGAGGGATGAGCATGGTTTGGATGATTGGGAGGTCGCTGGAGGCCCT CGTCACTTTTATGCTAAAGAGAAACCATGTTACTCCCTTCAATATTCAGATGTGGAGACAATGAAAGAGAAATTTGCAAAGCTGTTATTGGGTGAAGATT TCACAGGAGGGCGTAATGGCCTCAGCCCTGCGTTGGCATTATCCAATGCTATAACAAATCTTGCAGCCACGGTTTTCGGGGAGCTGTGGAAATTGCAGCC ATTGCCTGAAGAAAGAAAGACCAAGTGGCGAAGAGAAATGGACTGGTTGTTGTCCCCTACAAACTACATGGTTGAGTTAGTTCCTGCTAAGCAAAACTGT GCCAATGGTCGAGCGCTAGAGATAATGACACCAAAAGCCCGTGCAGATATCCATGTGAATCTTCCAGCACTTCAAAAGTTGGACTCTATGCTTATTGACA CGCTGGATTCAATGGTGAATACTGAGTTTTGGTACTCAGAAGTAGGCAGCCGGGCAGAAGGCAGAACCAAGAGCGCAAAGGAGAGCAAGAGATGGTGGCT CCCACTGCCGCAAGTACCGACAAATGGGCTTTCTGACTCGGGAAGAACGAAACTGCTCAATCAGAGTAAGGTGGTCTATCAAGTATTCAAGGCTGCCAAA TCCATCAACGAAACTATTTTGCTTGAAATGCCCGTGCCAACCATTATTAAGGATGCACTACCAAAGTCTGGAAAGGCAAACCTTGGTGAGGAACTGTACA AGTTGTTGACTGCAGAGTCAAACACAGCTGAGGAAATGCTCGATTCTCTTAATTTACAATCAGAACACAGTGCTCTTGAAGCCATCAACAAGCTGGAAGC TGCCGCTTTTGCATGGAAAGATAGAATGACTGCACAAGTCGGTGTTAAATCTCCTGTTCGAACACCATGGTCCTTTGTAAAGGACCCGGTGTCAGAGTTT GAAAAGATGGAGTCACTGTTGGACAGAACAGAATCCCTTCTACAGCAGCTAAAGAGCAGATATCCAAATCTTCCTCAAACATTTCTTGATTCTACAAAAA TCCAATTTGGCAAGGACGTGGGACATGCAATCTTGGAAGCATATTCACGGGTTCTTGGAAACTTGGCATTCAGCATACTGTCTAGGATAGCAGACATTAT GCAAGAAGATTCATTGACCAATCCCAGTTCTCCTGCGGCTACATGTTGCTTTCCAGGAATAAATTCATCAGGATATGTTGAGACTCCAGCCATGTCCTAC ATCTCCGACACTCACTCATCGAATCGGTTGAATAAGGTGGATGTGAAGCATCGAAAATCCAATGCTAGTCATATTTCTGATCAGGAACTCTCTTGTAGCG AAGCCAGGACAAGCTCGGTAATTGCAACACCAAGTCGAAGTCGAGTATGGTGCATTGGTGGAGATGCTTGTAGAAGTCTGTCCCCTAAAAAGTCTCCAAA ACATTAA
AA sequence Show only first row Show all	>Potri.003G106400.4 pacid=42785919 polypeptide=Potri.003G106400.4.p locus=Potri.003G106400 ID=Potri.003G106400.4.v4.1 annot-version=v4.1 MMMRRWLACCARDTEISLDFDEQERIMTYNGLESCIINNQSYENESGTSRGEGCLSESFDDDGCSSCSSSKDAFGSFSSKWLRTKRDEHGLDDWEVAGGP RHFYAKEKPCYSLQYSDVETMKEKFAKLLLGEDFTGGRNGLSPALALSNAITNLAATVFGELWKLQPLPEERKTKWRREMDWLLSPTNYMVELVPAKQNC ANGRALEIMTPKARADIHVNLPALQKLDSMLIDTLDSMVNTEFWYSEVGSRAEGRTKSAKESKRWWLPLPQVPTNGLSDSGRTKLLNQSKVVYQVFKAAK SINETILLEMPVPTIIKDALPKSGKANLGEELYKLLTAESNTAEEMLDSLNLQSEHSALEAINKLEAAAFAWKDRMTAQVGVKSPVRTPWSFVKDPVSEF EKMESLLDRTESLLQQLKSRYPNLPQTFLDSTKIQFGKDVGHAILEAYSRVLGNLAFSILSRIADIMQEDSLTNPSSPAATCCFPGINSSGYVETPAMSY ISDTHSSNRLNKVDVKHRKSNASHISDQELSCSEARTSSVIATPSRSRVWCIGGDACRSLSPKKSPKH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Potri.003G106400 [exp]	0	1
AT1G34300			lectin protein kinase family p...		Potri.019G086300 [exp]	1.73	0.8288
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Potri.001G177600 [exp]	6.24	0.7957
AT1G28220		ATPUP3	purine permease 3 (.1)		Potri.002G099600 [exp]	10.09	0.8042
					Potri.004G114450 [exp]	12.32	0.7819
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Potri.005G071100 [exp]	13.85	0.7881
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.004G199900 [exp]	21.02	0.7758
AT2G23360			Plant protein of unknown funct...		Potri.009G099500 [exp]	21.21	0.7730
AT5G67390			unknown protein		Potri.005G145800 [exp]	26.38	0.7948
					Potri.009G010450 [exp]	26.40	0.7630
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.004G235600 [exp]	29.39	0.7319

Compare expression of checked genes

Potri.003G106400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.