Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45300 832 / 0 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2) AT2G45880 559 / 0 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1) AT4G00490 511 / 2e-175 BAM2, BMY9 BETA-AMYLASE 9, beta-amylase 2 (.1) AT2G32290 344 / 4e-110 BAM6, BMY5 BETA-AMYLASE 5, beta-amylase 6 (.1) AT4G15210 322 / 1e-103 BAM5, AT-BETA-AMY, BMY1, RAM1, ATBETA-AMY REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) AT4G17090 309 / 5e-97 CT-BMY, BMY8, BAM3 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) AT3G23920 285 / 1e-87 BAM1, BMY7, TR-BAMY BETA-AMYLASE 7, beta-amylase 1 (.1) AT5G55700 261 / 7e-79 BAM4, BMY6 BETA-AMYLASE 6, beta-amylase 4 (.1.2) AT5G18670 208 / 3e-59 BAM9, BMY3 BETA-AMYLASE 9, beta-amylase 3 (.1) AT4G36780 62 / 3e-10 BZR BEH2 BES1/BZR1 homolog 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G083700 [exp] 579 / 0 AT2G45880 863 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.002G159300 [exp] 564 / 0 AT2G45880 858 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.014G083800 [exp] 534 / 0 AT4G00490 799 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Potri.017G040800 [exp] 323 / 4e-102 AT4G15210 764 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Potri.001G148900 [exp] 310 / 2e-97 AT4G17090 885 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.003G085500 [exp] 305 / 2e-95 AT4G17090 868 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.008G174100 [exp] 284 / 3e-87 AT3G23920 876 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.010G062900 [exp] 283 / 2e-86 AT3G23920 908 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.001G087600 [exp] 223 / 2e-64 AT3G23920 459 / 3e-156 BETA-AMYLASE 7, beta-amylase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035679 [exp] 880 / 0 AT5G45300 884 / 0.0 BETA-AMYLASE 8, beta-amylase 2 (.1.2) Lus10018842 [exp] 540 / 0 AT2G45880 879 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Lus10037846 [exp] 475 / 4e-161 AT4G00490 684 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Lus10030392 [exp] 470 / 3e-159 AT4G00490 660 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Lus10017820 [exp] 381 / 1e-125 AT2G45880 551 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Lus10018491 [exp] 332 / 2e-105 AT4G15210 697 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10039702 [exp] 329 / 4e-105 AT4G15210 694 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10039701 [exp] 328 / 5e-103 AT4G15210 724 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10001087 [exp] 301 / 8e-94 AT4G17090 781 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10011035 [exp] 300 / 2e-93 AT4G17090 778 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF01373 [poplar] [flax] Glyco_hydro_14 Glycosyl hydrolase family 14 CL0058 [poplar] [flax] PF05687 [poplar] [flax] BES1_N BES1/BZR1 plant transcription factor, N-terminal
Representative CDS sequence Show only first row Show all	>Potri.003G106500.6 pacid=42784558 polypeptide=Potri.003G106500.6.p locus=Potri.003G106500 ID=Potri.003G106500.6.v4.1 annot-version=v4.1 ATGAACACAAACAACAGTAATCAAGATCTCCTAATCAACCCTCAGCAAACCCAAATTCCCCAACCCGACCCGTATTCTCACCTACCCCACCCCGTCCAAC CAGGCCCTAGCCCTCACCCTCACCCTCAAACCCGCCGTCCACGAGGCTTCGCCGCCACTGCCGCCGCAGCTGCATCAGCTGATAACACCTCCGCTGTTTC ATCTCCCAATGCCTCGGGTAAAGGTAAGAGAGAGAGAGAGAAAGAAAAGGAGAGAACCAAGCTTCGGGAACGACACCGTCGTGCTATTACAAGTAGAATG CTCACTGGTCTTAGACAATACGGTAATTTCCCTCTCCCTGCGCGTGCTGATATGAATGATGTTCTCGCTGCTTTAGCGCGTGAGGCTGGTTGGACTGTTG AAACGGATGGCACCACTTATCGCCAATCGCCTCCTCCTTCACATACGGGATCATTTGGAGTGAGGCCAGTGGAAAGTCCATTGCTAAAGAATTGTGCGGT GAAAGAGTGTCAGCCGTCGGTTCTTAGAATTGATGAGAGCTTGTCACCGGGGTCGCTTGATTCGATGGTGATTAGTGAGAGAGAGAATTCGAGGAATGAG AAGTACACAAGTACGAGTCCCATTAATTCTGTCATTGAATGCTTGGATGCTGATCAGCTTATACAAGATGTTCATTCTGGCATGCACCAAAACGATTTCA CGGAGAATTCTTATGTCCCTGTTTATGTAATGCTTGCACAGAATGGGTTTATCAACAATTGCTGCCAGTTGATTGACCCACAAGGAGTCAGACAGGAGTT AAGTCACATGAAGTCTTTAGATGTGGATGGTGTGGTTGTGGAGTGCTGGTGGGGAGTTGTTGAAGCATGGAGTCCTCAGAAGTATGCGTGGTCTGGCTAT AGGGAATTGTTTAACATTATCCAAGAATTCAAGTTGAAGTTGCAGGTTGTAATGGCATTTCATGAATATGGAGGAACTGACTCTGGCGATGTTTTGATCT CCCTCCCCCAATGGGTTTTAGAAATTGGGAAAGATAACCAGGACATATTTTTCACAGATCGTGAAGGAAGGAGGAACACTGAATGTCTATCTTGGGGCAT TGACAAAGAGCGAGTTCTAAAGGGAAGAACTGGTATAGAGGTTTATTTTGACTTCATGAGAAGCTTCCGGACGGAGTTTAATGACTTGTTCACAGAGGGC CTTATTACTGCTATTGAAATTGGACTTGGACCGTCTGGGGAACTGAAGTATCCATCCTTTTCAGAAAGGATAGGATGGAGGTATCCTGGTATCGGTGAGT TTCAGTGCTATGATAAATATTCACAACAAAATCTTCGCAAAGCAGCTAAATTGCGTGGACATTCATTTTGGGCTAGGGGGCCTGATAATGCTGGTCAGTA TAATTCAAGGCCACATGAAACTGGATTCTTCTGTGAACGAGGTGATTATGATAGCTACTTTGGTCGCTTTTTCCTCCATTGGTATTCCCAGTCACTGATA GACCATGCCGATAATGTTTTGTCTCTCGCAAGCTTTGCATTTGAGGATACAAAAATCATCATCAAGGTTCCTGCAGTTTATTGGTGGTACAGGACAGCAA GCCATGCAGCAGAGCTAACAGCAGGATACTATAACCCGACAAACCAGGACGGATATTCTCCAGTTTTTGAGGTTTTGAAGAAACACTCGGTGATAATGAA GTTTGTCTGCTCAGGATTGCCACTTTCAGGTTTTGAGAATGACGAAGCACTTGTTGATCCAGAAGGCTTGAGTTGGCAGATTCTGAATTCTGCTTGGGAC CGAGGATTGACAGTGGCTGGTGTAAATATGCTTGCCTGTTATGACAGAGAAGGGTATAGGAGAGTGGTTGAGATGGCAAAGCCAAGGAATGATCCCGACC ACCATCACTTTTCATTTTTCGTGTATCAACAGCCATCAGCTTTAGCTCAAGGAACAATTTGCTTTCCAGAGTTGGATTACTTTATCAAATGCATGCATGG TGAGATAACGGGTGATCTAGTATCCTGA
AA sequence Show only first row Show all	>Potri.003G106500.6 pacid=42784558 polypeptide=Potri.003G106500.6.p locus=Potri.003G106500 ID=Potri.003G106500.6.v4.1 annot-version=v4.1 MNTNNSNQDLLINPQQTQIPQPDPYSHLPHPVQPGPSPHPHPQTRRPRGFAATAAAAASADNTSAVSSPNASGKGKREREKEKERTKLRERHRRAITSRM LTGLRQYGNFPLPARADMNDVLAALAREAGWTVETDGTTYRQSPPPSHTGSFGVRPVESPLLKNCAVKECQPSVLRIDESLSPGSLDSMVISERENSRNE KYTSTSPINSVIECLDADQLIQDVHSGMHQNDFTENSYVPVYVMLAQNGFINNCCQLIDPQGVRQELSHMKSLDVDGVVVECWWGVVEAWSPQKYAWSGY RELFNIIQEFKLKLQVVMAFHEYGGTDSGDVLISLPQWVLEIGKDNQDIFFTDREGRRNTECLSWGIDKERVLKGRTGIEVYFDFMRSFRTEFNDLFTEG LITAIEIGLGPSGELKYPSFSERIGWRYPGIGEFQCYDKYSQQNLRKAAKLRGHSFWARGPDNAGQYNSRPHETGFFCERGDYDSYFGRFFLHWYSQSLI DHADNVLSLASFAFEDTKIIIKVPAVYWWYRTASHAAELTAGYYNPTNQDGYSPVFEVLKKHSVIMKFVCSGLPLSGFENDEALVDPEGLSWQILNSAWD RGLTVAGVNMLACYDREGYRRVVEMAKPRNDPDHHHFSFFVYQQPSALAQGTICFPELDYFIKCMHGEITGDLVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45300	BZR	BAM8, BMY2	BETA-AMYLASE 8, beta-amylase 2...		Potri.003G106500 [exp]	0	1
					Potri.017G058200 [exp]	7.54	0.8591
AT1G32810			RING/FYVE/PHD zinc finger supe...		Potri.011G152600 [exp]	11.48	0.8092
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Potri.007G119300 [exp]	12.08	0.8307	SDG904
AT2G25760			Protein kinase family protein ...		Potri.001G189100 [exp]	20.49	0.7548
AT2G16940			Splicing factor, CC1-like (.1....		Potri.004G177000 [exp]	20.49	0.8092
AT5G53220			unknown protein		Potri.014G039200 [exp]	21.23	0.8011
					Potri.003G148601 [exp]	21.56	0.8249
AT2G27980			Acyl-CoA N-acyltransferase wit...		Potri.004G217600 [exp]	21.97	0.8276
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Potri.001G253400 [exp]	23.45	0.8035
AT5G53930			unknown protein		Potri.011G115900 [exp]	27.91	0.7803

Compare expression of checked genes

Potri.003G106500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.