Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45290 320 / 4e-102 RING/U-box superfamily protein (.1.2) AT5G66160 72 / 1e-13 JR700, ATRMR1 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) AT2G27940 71 / 1e-13 RING/U-box superfamily protein (.1) AT1G21960 68 / 8e-13 RING/U-box superfamily protein (.1) AT1G71980 70 / 1e-12 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT3G18930 69 / 3e-12 RING/U-box superfamily protein (.1.2) AT4G09560 69 / 4e-12 NHL22 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT3G19910 68 / 4e-12 RING/U-box superfamily protein (.1) AT2G35000 68 / 5e-12 ATL9 Arabidopsis toxicos en levadura 9, RING/U-box superfamily protein (.1) AT1G35625 65 / 7e-12 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G127100 [exp] 830 / 0 AT5G45290 286 / 2e-89 RING/U-box superfamily protein (.1.2) Potri.006G190500 [exp] 160 / 3e-42 AT5G45290 150 / 3e-39 RING/U-box superfamily protein (.1.2) Potri.014G053500 [exp] 146 / 7e-38 AT5G45290 134 / 4e-34 RING/U-box superfamily protein (.1.2) Potri.018G114700 [exp] 145 / 4e-37 AT5G45290 131 / 2e-32 RING/U-box superfamily protein (.1.2) Potri.002G140500 [exp] 142 / 2e-36 AT5G45290 119 / 1e-28 RING/U-box superfamily protein (.1.2) Potri.005G111100 [exp] 76 / 7e-15 AT5G66160 264 / 3e-88 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) Potri.007G086100 [exp] 70 / 6e-14 AT2G01150 71 / 3e-16 RING-H2 finger protein 2B (.1) Potri.005G081200 [exp] 69 / 2e-13 AT1G15100 74 / 3e-17 RING-H2 finger A2A (.1) Potri.012G136400 [exp] 69 / 2e-13 AT5G52140 113 / 1e-30 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035680 [exp] 491 / 7e-169 AT5G45290 343 / 1e-111 RING/U-box superfamily protein (.1.2) Lus10037267 [exp] 427 / 4e-143 AT5G45290 255 / 2e-78 RING/U-box superfamily protein (.1.2) Lus10001683 [exp] 161 / 6e-43 AT5G45290 155 / 4e-41 RING/U-box superfamily protein (.1.2) Lus10030117 [exp] 159 / 6e-42 AT5G45290 155 / 5e-41 RING/U-box superfamily protein (.1.2) Lus10043426 [exp] 72 / 8e-14 AT4G40070 84 / 5e-19 RING/U-box superfamily protein (.1) Lus10034157 [exp] 71 / 1e-13 AT4G40070 84 / 7e-19 RING/U-box superfamily protein (.1) Lus10028406 [exp] 68 / 1e-12 AT4G35840 371 / 6e-132 RING/U-box superfamily protein (.1) Lus10041859 [exp] 68 / 1e-12 AT4G35840 371 / 6e-132 RING/U-box superfamily protein (.1) Lus10035677 [exp] 70 / 2e-12 AT3G03550 150 / 5e-42 RING/U-box superfamily protein (.1) Lus10029456 [exp] 64 / 2e-12 AT5G10380 86 / 3e-21 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.003G106600.1 pacid=42786297 polypeptide=Potri.003G106600.1.p locus=Potri.003G106600 ID=Potri.003G106600.1.v4.1 annot-version=v4.1 ATGGGATCCAGTGGAAGCAAGGCATATCGTGGTGGTGCATCGTCGTCGTCATCATCAAGTGGAAGTGGACGGAAGGGAAAATCTAAAGGGAGGAGTAAGG TTTTCCAGTCTTCTTGTTTGGGTACTCCTTGTGGATCTCGCGATAGTACCAGTGGTGACCGTGTTTGTGATGGTGGGAATAAAGAAAATTGTGAAGGAAA TGCTTCATCTACTAACCGGAATGAAATAGACTCCGATGAGGTTAAAATTGAGTGTTATGGAAACGTTAAAGTGGAGCAATCTGATAAAACGCCCTGCATA TCGTCGGATGTTGAGCTCGATGAATGGAATCAAGCAAGTATCACAAACACTTCCTCTAGAACAGGTAGCAGCTCTGCTCGAGCTGCTGCTCCTACACAGT CATCGACCTTTCCAAGTCGGCTTCTTTCTCGCTTGAGTTTTATTCCCGGTAATGTGAGTTTTAGGTTGAGCAGAGCAGTGAGTTTAGGGTCGTCAAGGGC ATATCACACTCATTCAACTGGTCCCAGAATGTTTGATGGTGAAGATGAGATTCGCCATCATCCACAGTCTGCCAATTCTGTTGTTGATGGAAATGGAAAT GAAATACAACAAATTAGTGATTTATTGGCTACATCCCTGGTGAGTAGAACTGCACATCATCATGAAGATACGGCTGCTGGTTTGCAGTTGCATAGTCAAG CACCTGATCTCTTGGACAACATGCAAGAAAACCAGAATATTTTTTCAATTCGCAATTCAGGAAGAGATGGAGGTGGAAATAGAGTGGAGGTTGATGCAAA CTTACGTTCTCCTAGAATGTTCAATGACATGGATGGGATTGAGACTAGACTTTCCGATAGGCGAATTGGAGCACGAGAACCTGCTGAGCGTAATGTTCGT TTTAGCCGAACCTTAAGTGTTGGAAGACTTCGTGATAGAGTTCTTCGTCGGTCATCACTACCGGAACTTACATTTTGTCCCTTGCAACAAGAGAGAGAAA TGAGAGGTTCTAGCCAGGGTAGTGGGAGACAGGCAGTGGGTGGGGAGATGAGGGTGTCAGAATCTGAAGGGAATACTCTAACCTCCACAACTGCACTGGG TTATCCTCCATCTGGCATGTCTAGCTCACTGTTCAGCATTCAAGATCATGAGGTGGAAACCTCTAGAACAAGAGAAGCCAGGTATCGTGACTTGCTAGAG CATAGATCAAATTTCCTTGAACGGAGGAGAAGAATACGATCTCAGGTTCGCGCTCTTCAGAGGTTGGGAAGCCGTTTCGAAAACCTCTCTGGACATGAGA GGTCTTGTATTTTATCCGGTCAACACAGAACAGGTCGCTGTACATGTCGTGTAAATAATCGAGATGCAAACTTAAATGATGACACAAGTGCTAGGGCTAG CATATCAAGAATTGTCATGTTAGCTGAAGCTCTATTTGAGGTTCTGGATGAAATTCACCAGCAATCAGTTGTATTATCCTCTCTTCCTTCCATGTCTTCA CTTGGATCTGTACCCGCTCCTAATGAAATAGTGGAATCTTTGCCAGTTAAATTATATGCCAAGTCCCAGAAACATCAGAATGAGGATACAGCTCAATGTT ACATATGCCTTGTGGAATATGAGGAAGGAGACAGCATGCGAGTGTTGCCTTGCCATCATGAATTCCACAGAACATGTGTAGACAAGTGGCTTAAGGAGAT TCACAGGGTATGTCCACTTTGTCGTGGTGATATTTGTAGATCTGAATCATCGCCTGCTGAAAACTAA
AA sequence Show only first row Show all	>Potri.003G106600.1 pacid=42786297 polypeptide=Potri.003G106600.1.p locus=Potri.003G106600 ID=Potri.003G106600.1.v4.1 annot-version=v4.1 MGSSGSKAYRGGASSSSSSSGSGRKGKSKGRSKVFQSSCLGTPCGSRDSTSGDRVCDGGNKENCEGNASSTNRNEIDSDEVKIECYGNVKVEQSDKTPCI SSDVELDEWNQASITNTSSRTGSSSARAAAPTQSSTFPSRLLSRLSFIPGNVSFRLSRAVSLGSSRAYHTHSTGPRMFDGEDEIRHHPQSANSVVDGNGN EIQQISDLLATSLVSRTAHHHEDTAAGLQLHSQAPDLLDNMQENQNIFSIRNSGRDGGGNRVEVDANLRSPRMFNDMDGIETRLSDRRIGAREPAERNVR FSRTLSVGRLRDRVLRRSSLPELTFCPLQQEREMRGSSQGSGRQAVGGEMRVSESEGNTLTSTTALGYPPSGMSSSLFSIQDHEVETSRTREARYRDLLE HRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRTGRCTCRVNNRDANLNDDTSARASISRIVMLAEALFEVLDEIHQQSVVLSSLPSMSS LGSVPAPNEIVESLPVKLYAKSQKHQNEDTAQCYICLVEYEEGDSMRVLPCHHEFHRTCVDKWLKEIHRVCPLCRGDICRSESSPAEN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45290			RING/U-box superfamily protein...		Potri.003G106600 [exp]	0	1
AT5G47730			Sec14p-like phosphatidylinosit...		Potri.006G004000 [exp]	1.00	0.9616	Pt-SSH1.2
AT1G63430			Leucine-rich repeat protein ki...		Potri.003G124800 [exp]	1.41	0.9489
AT5G58300			Leucine-rich repeat protein ki...		Potri.013G158800 [exp]	2.44	0.9400
AT1G76660			unknown protein		Potri.002G001100 [exp]	4.24	0.9298
AT2G32980			unknown protein		Potri.014G158000 [exp]	4.89	0.9448
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Potri.001G149200 [exp]	6.32	0.9405
AT2G22125		POM2, CSI1	POM-POM 2, cellulose synthase-...		Potri.007G087200 [exp]	6.48	0.9290
AT3G45850			P-loop containing nucleoside t...		Potri.001G233700 [exp]	6.63	0.9278
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Potri.017G110200 [exp]	7.61	0.9242
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Potri.011G090900 [exp]	7.74	0.9355

Compare expression of checked genes

Potri.003G106600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.