Plant FIBer expression Database

Potri.003G106700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G19400 199 / 1e-66 Profilin family protein (.1)
AT4G19410 198 / 4e-62 Pectinacetylesterase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0431 PF PF00235 Profilin Profilin
Representative CDS sequence
>Potri.003G106700.3 pacid=42784930 polypeptide=Potri.003G106700.3.p locus=Potri.003G106700 ID=Potri.003G106700.3.v4.1 annot-version=v4.1
ATGGACTGGGGTTTTGTACACAAAGCTTGGGAGAAATGGACTTCCATTAACGTCGGCTCTTCCACCGGTGAACCATTGAAGGCTGCTTTGCTTATTAACT
ATGATCCAAATGCACCATCTCGCTTGCTTTCTATCATTGCAGAACAAGAAGGTATCAATGCCGTTCCCACTGAAGTGAGCCAGTTTGTTGATTTTGTTAA
AAGGAATAAACTTCATTCGGAGAACTTTACTATCGGGCAAAATCAATATGTGGTTACATCCATTCATGAGAATTGTTTCTGTGCAAGGTCTCTGACTACA
TCAAAACCTGCTGGTGAAGGTGCCATCATCATGCAGACTTCAGCATTCCTCTTGGTTGCATTGTATGATGGATCAATTGGTGCAGCATCCCGTGCTATGG
TGGCTGTTGATCAGTTTGCTTGGCAGCTTGGGCGAAGAAATCTGTAA
AA sequence
>Potri.003G106700.3 pacid=42784930 polypeptide=Potri.003G106700.3.p locus=Potri.003G106700 ID=Potri.003G106700.3.v4.1 annot-version=v4.1
MDWGFVHKAWEKWTSINVGSSTGEPLKAALLINYDPNAPSRLLSIIAEQEGINAVPTEVSQFVDFVKRNKLHSENFTIGQNQYVVTSIHENCFCARSLTT
SKPAGEGAIIMQTSAFLLVALYDGSIGAASRAMVAVDQFAWQLGRRNL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G19400 Profilin family protein (.1) Potri.003G106700
[exp]
0 1
AT4G33670 NAD(P)-linked oxidoreductase s... Potri.009G081300
[exp]
2.00 0.7954
AT1G43850 SEU SEUSS transcriptional co-regul... Potri.005G058501
[exp]
2.44 0.7917
AT2G20390 unknown protein Potri.014G193150
[exp]
11.22 0.7575
AT1G78560 Sodium Bile acid symporter fam... Potri.011G103200
[exp]
15.87 0.7164
AT3G06890 unknown protein Potri.008G221000
[exp]
18.30 0.7628
AT2G37640 ATHEXPALPHA1.9,... ARABIDOPSIS THALIANA EXPANSIN ... Potri.006G086100
[exp]
20.19 0.7659 EXPA3.1,PtEXPA16
AT1G65380 AtRLP10, CLV2 clavata 2, Receptor Like Prote... Potri.013G087200
[exp]
20.49 0.6754 CLV2.1
AT3G07470 Protein of unknown function, D... Potri.014G177800
[exp]
20.49 0.6793
AT3G18030 ATHAL3A HALOTOLERANCE DETERMINANT 3, A... Potri.015G089600
[exp]
23.43 0.7380
AT1G02280 PPI1, ATTOC33, ... PLASTID PROTEIN IMPORT 1, tran... Potri.002G183400
[exp]
24.18 0.7018 Pt-PPI1.3

Potri.003G106700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.