Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SWI1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51330 432 / 3e-141 DYAD, SWI1 SWITCH1 (.1) AT5G23610 156 / 2e-40 unknown protein AT2G01810 49 / 1e-05 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G66170 47 / 4e-05 MMD1 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G22260 46 / 0.0001 MS1 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G126901 [exp] 1023 / 0 AT5G51330 413 / 6e-134 SWITCH1 (.1) Potri.004G137000 [exp] 198 / 1e-54 AT5G23610 276 / 1e-86 unknown protein Potri.T012300 [exp] 181 / 1e-48 AT5G23610 257 / 2e-79 unknown protein Potri.010G101300 [exp] 43 / 0.0008 AT5G22260 649 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009021 [exp] 450 / 2e-147 AT5G51330 370 / 3e-119 SWITCH1 (.1) Lus10009659 [exp] 421 / 3e-135 AT5G51330 353 / 5e-112 SWITCH1 (.1) Lus10010966 [exp] 46 / 0.0002 AT1G66170 630 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10031357 [exp] 45 / 0.0002 AT1G66170 620 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G106800.1 pacid=42786612 polypeptide=Potri.003G106800.1.p locus=Potri.003G106800 ID=Potri.003G106800.1.v4.1 annot-version=v4.1 ATGACTACCATGGAGCTGGTTGATGTTGCAGTGATAGACCACCCATCGGAAATAAAAAGGAGGCAGAACTCCGAGGACGCCGATAGAAGGCTTTTTTTGG GCGGACATTGCCTGCATCACCCAACATTTACCACAGCACCACCATTTGACCCAGCTGAGCATATTAAAGTGAGCTCTTTTTATGAAGTTGATCACTCCAA GCTGCCTCATAAATCCCCTGATCAACTCAACAAAACCCGGGTTGTGATGGTGAATGAAAAGACCAGGATGAGAGTCTCGCTGAGGTTTCCAAGCATCAAT TCTCTAAGATGTTACTTCAATGAGATTGAAGCTATTAATTACAAGAAAGACATGAAAACGAAGAAGCAGCAGCTACCAGCATTCGACGAGAAATACATTA TAGGATCAGAAGTTGCAGGGGAAGCTCTTTATAGGAGAATCTCTTCTCAAGAAATGGCAGACAAGAGTTACTCATGGAGTTTCTGGATGGTTAAACATCC TTCGGTTTCACCTCGAAAAGTGTCATACCCACCTACAAGTACTCATGTTAATAAATTTGTTGGTGCAAGGAAGGTGTCTCTCATGTCTGAGCTCAACGGG ACAGGCATGGTTAAGTGGGGTCAGCGCCGGCAGGTCAGGTTCTTGGCTAAACACGTAGAGGATAAACGTGAAATAGTGATTGCATCGAAGGATTTGATTA AAAGCGAAGAAGAGAAAGACAGTGATGGTAGTGATGATGACACAGACGATGAGGACGAGGAGGAGGTCGATGTTAAGTTAGTAGTAAACAAGTCAAGTGA AGCTAAAAGGAAATTACGTAAGAGAAAGTGTCAAGGTGGGTCTGGTATTAGCAAATTATCACCAAAAAAGAAAAGGCGTAAAATTGAAAAGAAGAACCAG ATTGTGGTCTATAGGCAAAAGAAGAACAAACTCATCAAGAATTCTATTGACAGATGGTCTGCGGGGAGGTATAAATTGGCTGAGGAAAACATGTTAAAGG TAATGAAAGAGCAAAATGCTGTGTTTCGACGCCCAATTTTAAGGCCAGAATTGAGAGCTGAGGCACGGAAGTTGATTGGGGATACTGGGCTGTTAGACCA CTTGTTGAAGCATATGTCAGGGAAGGTGGCTCCGGGAGGAGAAGAGAGATTCAGAAGGAGGCATAACGCAGATGGAGCAATGGAGTATTGGCTGGAGAAG GCTGATTTGGTTGATATCAGGAAAGAGGCTGGTGTGCAGGATCCTTATTGGACACCTCCACCTGGGTGGAAACCTGGTGATAATCCTAGTCAGGATCCAG TTTGTGCTAGAGAGATCAAGGAACTCAGAGAAGAAATTGCTAAAATTAAAGGGGAGATGGAGGCAATGGTGTCTAAAAAACACGGGGAGGAATTAGCAAT GGTGGCAGCACCGAATTATTCTCCTACAAGTCAGGACATGGAGCATGACAACTTCTTAATTCCACTGAAGGAAATGTACATTGATTTGGTGAATAAGAAG GTAAAGATGGAGGAACAACTAAAGGAAATTTCAGAATCTTTGTATGGGATGAAGGAAGAAATGGAGAAGCTAAAAACCAGAGTGGAGAAATCAAACAGAG CAGAATCAACTGAAAAGCCAGCTTTATTAATGGGCTCAACAGAGTCAATCACGCCAGCAGGAACTGGAAGAAAGGGGAAAGGAGTAATGCATCAGGAAAA AGAAGCAACGGTTTTAGGGGAATCAGCACAAGAACAATGCAAGTCATCATCAGGAGGCATCATAGCACCAAGAACAGAATCACCAGCACCAACGGAGGAC AGGGCAGCAAAGATAGAGAGGCTGAAAAGCGGGTTTAGAATATGCAAGCCCCAGGGAAGTTTCCTGTGGCCGGATATGACTACCTTAACCCCTCACCCTC AGGTTGTGGTCCTACTAGAAGACCTCATTGCGGTACAAACACCTCCCTCAGTGTCCTCCACTACACCAAAACAATCTCACTTCCTCTTTGCTCCTCCATC TCAAACCCATACACCCCACCGTACTTTCCCTGTGAAGCCATTAGCTGAGAGAAGGCCTGTCACCATTCCCCAATCCACAGCTGCCACGACTCCAACCAGC TGTCCTCCCCTTGATCAAATGACTCACTCCCAGTATGAGAATAGCAGCATTTCCACTTCTACTACCATCACCACCACTACCAAAACCCCTCTCATCAACC TTAATGAGCCACTGAATACCAATCAAACTGATGATTATGGATTGTTTTATGGGTCTCAGTCTCATGCTGAAGCCTCTCCTCACCCTGTCACTTACCAAAG AAGACATCATCAAAATGTGACCACCAGTATTGCCATGCCAAGTTTGGGACCCACAAAGAAAGGGATGATGAGCCAATGGGAGGAAGGTGATCGGAGAACA GGAATGATAAGGTACTGTGAGCAGTGTGAGCAGCAACAGGGATGCTCCTCTGCCTCTTCCATTGCATCTTCTTCCTTGCCAATGGGAAAGGGGACTTGGT TGGCTCTGGCTACTTCTAAGGCTTCCGTGGAGCACAAATCTAAAAGGGGTTAA
AA sequence Show only first row Show all	>Potri.003G106800.1 pacid=42786612 polypeptide=Potri.003G106800.1.p locus=Potri.003G106800 ID=Potri.003G106800.1.v4.1 annot-version=v4.1 MTTMELVDVAVIDHPSEIKRRQNSEDADRRLFLGGHCLHHPTFTTAPPFDPAEHIKVSSFYEVDHSKLPHKSPDQLNKTRVVMVNEKTRMRVSLRFPSIN SLRCYFNEIEAINYKKDMKTKKQQLPAFDEKYIIGSEVAGEALYRRISSQEMADKSYSWSFWMVKHPSVSPRKVSYPPTSTHVNKFVGARKVSLMSELNG TGMVKWGQRRQVRFLAKHVEDKREIVIASKDLIKSEEEKDSDGSDDDTDDEDEEEVDVKLVVNKSSEAKRKLRKRKCQGGSGISKLSPKKKRRKIEKKNQ IVVYRQKKNKLIKNSIDRWSAGRYKLAEENMLKVMKEQNAVFRRPILRPELRAEARKLIGDTGLLDHLLKHMSGKVAPGGEERFRRRHNADGAMEYWLEK ADLVDIRKEAGVQDPYWTPPPGWKPGDNPSQDPVCAREIKELREEIAKIKGEMEAMVSKKHGEELAMVAAPNYSPTSQDMEHDNFLIPLKEMYIDLVNKK VKMEEQLKEISESLYGMKEEMEKLKTRVEKSNRAESTEKPALLMGSTESITPAGTGRKGKGVMHQEKEATVLGESAQEQCKSSSGGIIAPRTESPAPTED RAAKIERLKSGFRICKPQGSFLWPDMTTLTPHPQVVVLLEDLIAVQTPPSVSSTTPKQSHFLFAPPSQTHTPHRTFPVKPLAERRPVTIPQSTAATTPTS CPPLDQMTHSQYENSSISTSTTITTTTKTPLINLNEPLNTNQTDDYGLFYGSQSHAEASPHPVTYQRRHHQNVTTSIAMPSLGPTKKGMMSQWEEGDRRT GMIRYCEQCEQQQGCSSASSIASSSLPMGKGTWLALATSKASVEHKSKRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51330		DYAD, SWI1	SWITCH1 (.1)		Potri.003G106800 [exp]	0	1	Pt-SWI1.2
AT4G02810		FAF1	FANTASTIC FOUR 1, Protein of u...		Potri.002G053400 [exp]	5.09	0.8920
AT2G15180			Zinc knuckle (CCHC-type) famil...		Potri.001G006850 [exp]	5.47	0.8891
AT1G19230			Riboflavin synthase-like super...		Potri.006G137300 [exp]	5.65	0.7745
AT5G12220			las1-like family protein (.1.2...		Potri.009G067800 [exp]	9.16	0.8776
AT2G17570			Undecaprenyl pyrophosphate syn...		Potri.002G039400 [exp]	9.16	0.8830
AT5G12220			las1-like family protein (.1.2...		Potri.001G273600 [exp]	10.81	0.8306
AT1G15190			Fasciclin-like arabinogalactan...		Potri.001G306800 [exp]	11.22	0.8597
AT3G09510			Ribonuclease H-like superfamil...		Potri.004G015067 [exp]	12.40	0.8482
					Potri.006G122650 [exp]	15.00	0.8212
					Potri.001G282604 [exp]	18.33	0.8434

Compare expression of checked genes

Potri.003G106800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.