Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	2OGox20
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23340 393 / 1e-137 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G51310 370 / 7e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G50960 130 / 3e-35 ATGA2OX7 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 7, gibberellin 2-oxidase 7 (.1) AT1G55290 129 / 1e-34 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G21200 128 / 3e-34 ATGA2OX8 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) AT1G80330 128 / 4e-34 ATGA3OX4 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 4, gibberellin 3-oxidase 4 (.1) AT1G52820 125 / 1e-33 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G50210 119 / 7e-31 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT5G51810 119 / 2e-30 AT2353, GA20OX2, ATGA20OX2 gibberellin 20 oxidase 2 (.1) AT4G25420 117 / 4e-30 AT2301, GA5, ATGA20OX1 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G159500 [exp] 436 / 7e-155 AT4G23340 402 / 3e-141 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.003G128100 [exp] 424 / 5e-150 AT4G23340 458 / 2e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.001G176200 [exp] 142 / 5e-40 AT1G52820 496 / 8e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.015G002800 [exp] 140 / 6e-39 AT5G24530 521 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G145300 [exp] 136 / 2e-37 AT4G21200 354 / 1e-121 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.010G096800 [exp] 133 / 3e-36 AT4G21200 362 / 8e-125 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.012G006300 [exp] 132 / 1e-35 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G026700 [exp] 130 / 2e-35 AT4G21200 444 / 1e-157 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.006G248000 [exp] 131 / 4e-35 AT1G52820 280 / 6e-93 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009663 [exp] 390 / 1e-136 AT4G23340 358 / 6e-124 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10018836 [exp] 348 / 7e-120 AT5G51310 348 / 7e-120 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10009025 [exp] 188 / 2e-58 AT5G51310 131 / 9e-38 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023024 [exp] 137 / 1e-37 AT1G52820 371 / 2e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10015016 [exp] 136 / 7e-37 AT4G25420 494 / 3e-176 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10031671 [exp] 133 / 1e-35 AT5G07200 508 / 1e-180 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) Lus10027399 [exp] 130 / 1e-34 AT4G25420 514 / 0.0 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10016659 [exp] 127 / 5e-34 AT1G52820 445 / 1e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006759 [exp] 126 / 2e-33 AT4G21200 419 / 2e-147 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10018372 [exp] 124 / 1e-32 AT4G21200 419 / 2e-147 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.003G106900.2 pacid=42787051 polypeptide=Potri.003G106900.2.p locus=Potri.003G106900 ID=Potri.003G106900.2.v4.1 annot-version=v4.1 ATGATGCCTGAATCCCATAGTTCTATAGAGCTTCCCGTTTTTGACATCTCACAGCCCATTAGCCCATCCTGTCTCTCCTCCCTTTCTCTAGCCTGCAACG AATGGGGTTTCTTCCATATAATTAACCATGGAGTTTCGAAAGATGTTTACAGGAAACTCTACTCCCTCTCGACACATATCTTCAGCCTGCCTTACGAGTC CAAAATCAAGTTAGGTCCATCATCATCGGTAAGAACCTACACCCCTCATTTTATTGCATCGCCATTCTTTGAAAGTCTTCGTGTTTCCGGACCAGACTTC TTTGCTTCTGCACAAAGTTCCACAGGAATTCTCTTGGACAATCCAAATCCTGATGAATTCAGTGAGACAGTTAAAGAATATGGGATCGAAATGTCTGAGC TTTCGAGAAGAATAGTGAGGGCAGTGCTAATGAGCATGGGAGGAGATTTTGCAAGGAAGTTTTATGAATCTGATTTCAATAACTGTCACGGATACTTGAG AATAAACAGCTATTCGCCACCAGAAATTAGTACTGTGGAAGGAAAAGAAGTTGAGGGGCTTGGAATGCACACGGACATGAGCTGTGTGACAATTGTATGT CAAGATGAGATTGGAGGGCTTCAAGTAAGATCCAGGGAAGGGAAGTGGATGGACATAAACCCACGTGAAGATACTCTTGTAGTGAACATTGGAGATTTGA TGCATGCGTGGAGCAATGGGAAGTTGAGATCATCTGAACATAGAGTTGTTTTAAAACGAAACGTACACAGATTCTCTTTAGCCTTCTTTTGGTGCTTTGA GGATGAGAAGGTGATTTTTGCCCCAGATGAAGTGGTGGGAGAAGGAAGTATGAGGATCTATAACCCATTTGTTTGCAGAGAATATTTGAAATACAGAGAG AGCAGTGAGAAAGGTAGGTTTGATAAGGTTGGGTTTACTGTCAAAGATTTTGCTGGAAATCTGGAACGATAG
AA sequence Show only first row Show all	>Potri.003G106900.2 pacid=42787051 polypeptide=Potri.003G106900.2.p locus=Potri.003G106900 ID=Potri.003G106900.2.v4.1 annot-version=v4.1 MMPESHSSIELPVFDISQPISPSCLSSLSLACNEWGFFHIINHGVSKDVYRKLYSLSTHIFSLPYESKIKLGPSSSVRTYTPHFIASPFFESLRVSGPDF FASAQSSTGILLDNPNPDEFSETVKEYGIEMSELSRRIVRAVLMSMGGDFARKFYESDFNNCHGYLRINSYSPPEISTVEGKEVEGLGMHTDMSCVTIVC QDEIGGLQVRSREGKWMDINPREDTLVVNIGDLMHAWSNGKLRSSEHRVVLKRNVHRFSLAFFWCFEDEKVIFAPDEVVGEGSMRIYNPFVCREYLKYRE SSEKGRFDKVGFTVKDFAGNLER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23340			2-oxoglutarate (2OG) and Fe(II...		Potri.003G106900 [exp]	0	1	2OGox20
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.001G228200 [exp]	4.24	0.9632
AT5G05340			Peroxidase superfamily protein...		Potri.016G132800 [exp]	4.79	0.9685	Pt-PRX1.7
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Potri.003G132700 [exp]	6.32	0.9555
AT4G00340		RLK4	receptor-like protein kinase 4...		Potri.013G086100 [exp]	7.28	0.9300
AT2G37050			Leucine-rich repeat protein ki...		Potri.007G004700 [exp]	7.54	0.9622
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134475 [exp]	9.53	0.9498
					Potri.019G016110 [exp]	10.00	0.9550
AT4G10780			LRR and NB-ARC domains-contain...		Potri.001G405025 [exp]	10.24	0.9452
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Potri.004G090600 [exp]	13.49	0.9531
AT1G65610		ATGH9A2 ,KOR2	KORRIGAN 2, ARABIDOPSIS THALIA...		Potri.008G079500 [exp]	13.78	0.9519

Compare expression of checked genes

Potri.003G106900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.