Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61500 568 / 0 ATATG3 autophagy 3 (APG3) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G126500 [exp] 622 / 0 AT5G61500 542 / 0.0 autophagy 3 (APG3) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009664 [exp] 568 / 0 AT5G61500 568 / 0.0 autophagy 3 (APG3) (.1) Lus10009026 [exp] 564 / 0 AT5G61500 562 / 0.0 autophagy 3 (APG3) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0097 [poplar] [flax] TypeIII_Chap PF03987 [poplar] [flax] Autophagy_act_C Autophagocytosis associated protein, active-site domain
Representative CDS sequence Show only first row Show all	>Potri.003G107000.1 pacid=42786379 polypeptide=Potri.003G107000.1.p locus=Potri.003G107000 ID=Potri.003G107000.1.v4.1 annot-version=v4.1 ATGGTTCTATCACAGAAGATTCACGAAGCATTCAAAGGAACAGTGGAGAGAATCACAGGTCCACGCACTGTTTCTGCCTTTAAAGAGAAAGGCGTTCTTA GTGTCAGCGAATTCATTCTCGCCGGTGACAATCTCGTCTCTAAATGCCCCACTTGGTCCTGGGAATCTGGTGAGCCGAGCAAGAGGAAGCCTTACTTGCC TGCAGAGAAACAGTTTCTGATTACTCGAAATGTTCCTTGTCTACGAAGAGCTGCGTCTGTAGAAGAAGATTATGAAGCTGCTGGAGGTGAAGTTCTACTT GATAATGAAGATAATGATGGATGGCTAGCAACTCATGGGAAACCTAAAGAAACTAAAGGTGACGAGGATGAGAATGTGCCTTCAATGGAGGCTCTAGATA TCAGTGTTAAAAGAATTCCTATCCAAACAAACCCTTCATACTTTGGGGGAGAGGAGGAAGATATTCCTGACATGGCAGACTTTGAAGACCCTGACAATCT AATCGAATCAGATCCTGCAACACTTCAGACTACGTATCTAGTGGCTCACGAACCTGATGATGATGATAACATTCTACGCACTCGAACATATGATGTCAGC ATCACGTACGATAAATATTATCAAACTCCTCGTGTATGGCTTACTGGATATGATGAGTCAAGGATGCTTTTGGAACCAGAGCTTGTACTTGAAGATGTTA GCCAAGACCATGCACGCAAAACGGTAACTATTGAAGACCATCCTCACTTACCTGGGAAGCATGCATCAGTGCATCCTTGCCGACATGGGGCTGTAATGAA GAAAATTATTGATGTTCTAATGTCACGCGGAGTTGAGCCAGAAGTTGACAAGTACCTTTTCTTATTTTTGAAATTTGTAGCCTCTGTAATTCCAACCATT GAATATGATTACACCATGGATTTCGATCTTGGTAGCTCAAGTAGCTGA
AA sequence Show only first row Show all	>Potri.003G107000.1 pacid=42786379 polypeptide=Potri.003G107000.1.p locus=Potri.003G107000 ID=Potri.003G107000.1.v4.1 annot-version=v4.1 MVLSQKIHEAFKGTVERITGPRTVSAFKEKGVLSVSEFILAGDNLVSKCPTWSWESGEPSKRKPYLPAEKQFLITRNVPCLRRAASVEEDYEAAGGEVLL DNEDNDGWLATHGKPKETKGDEDENVPSMEALDISVKRIPIQTNPSYFGGEEEDIPDMADFEDPDNLIESDPATLQTTYLVAHEPDDDDNILRTRTYDVS ITYDKYYQTPRVWLTGYDESRMLLEPELVLEDVSQDHARKTVTIEDHPHLPGKHASVHPCRHGAVMKKIIDVLMSRGVEPEVDKYLFLFLKFVASVIPTI EYDYTMDFDLGSSSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61500		ATATG3	autophagy 3 (APG3) (.1)		Potri.003G107000 [exp]	0	1
AT4G19860			alpha/beta-Hydrolases superfam...		Potri.012G121596 [exp]	4.58	0.6826
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Potri.019G080300 [exp]	6.00	0.6797
AT3G13650			Disease resistance-responsive ...		Potri.001G023800 [exp]	15.81	0.6852
AT3G61590		HWS, HS	HAWAIIAN SKIRT, Galactose oxid...		Potri.002G166500 [exp]	18.02	0.5907
AT2G26800			Aldolase superfamily protein (...		Potri.009G068600 [exp]	18.33	0.6339
AT4G31860			Protein phosphatase 2C family ...		Potri.018G017701 [exp]	21.56	0.6489
AT2G32970			unknown protein		Potri.014G158200 [exp]	23.21	0.6285
AT5G17165			unknown protein		Potri.013G081700 [exp]	25.92	0.5936
AT5G64500			Major facilitator superfamily ...		Potri.009G081100 [exp]	32.03	0.5768
AT3G52030			F-box family protein with WD40...		Potri.009G056500 [exp]	35.09	0.5761

Compare expression of checked genes

Potri.003G107000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.