Plant FIBer expression Database

Potri.003G107100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G39730 166 / 9e-53 Lipase/lipooxygenase, PLAT/LH2 family protein (.1)
AT2G22170 160 / 2e-50 Lipase/lipooxygenase, PLAT/LH2 family protein (.1)
AT5G65158 127 / 2e-38 Lipase/lipooxygenase, PLAT/LH2 family protein (.1)
AT5G07190 51 / 6e-08 ATS3 seed gene 3 (.1.2)
AT2G41475 41 / 0.0001 Embryo-specific protein 3, (ATS3) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G076900
[exp]
183 / 2e-59 AT2G22170 214 / 6e-72 Lipase/lipooxygenase, PLAT/LH2 family protein (.1)
Potri.007G091100
[exp]
181 / 2e-58 AT4G39730 200 / 2e-66 Lipase/lipooxygenase, PLAT/LH2 family protein (.1)
Potri.007G091000
[exp]
175 / 4e-56 AT2G22170 216 / 1e-72 Lipase/lipooxygenase, PLAT/LH2 family protein (.1)
Potri.005G077000
[exp]
172 / 4e-55 AT4G39730 218 / 3e-73 Lipase/lipooxygenase, PLAT/LH2 family protein (.1)
Potri.006G069800
[exp]
45 / 4e-06 AT2G41475 194 / 1e-63 Embryo-specific protein 3, (ATS3) (.1)
Potri.018G131800
[exp]
45 / 7e-06 AT2G41475 197 / 5e-65 Embryo-specific protein 3, (ATS3) (.1)
Potri.001G193500
[exp]
44 / 7e-06 AT5G62200 184 / 1e-59 Embryo-specific protein 3, (ATS3) (.1)
Potri.015G132700
[exp]
43 / 4e-05 AT5G62200 204 / 1e-67 Embryo-specific protein 3, (ATS3) (.1)
Potri.010G214400
[exp]
40 / 0.0004 AT5G62200 93 / 7e-24 Embryo-specific protein 3, (ATS3) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009020
[exp]
231 / 6e-78 AT2G22170 186 / 2e-60 Lipase/lipooxygenase, PLAT/LH2 family protein (.1)
Lus10037491
[exp]
172 / 6e-55 AT2G22170 221 / 3e-74 Lipase/lipooxygenase, PLAT/LH2 family protein (.1)
Lus10006497
[exp]
172 / 9e-55 AT2G22170 219 / 1e-73 Lipase/lipooxygenase, PLAT/LH2 family protein (.1)
Lus10019416
[exp]
44 / 2e-05 AT2G41475 179 / 7e-58 Embryo-specific protein 3, (ATS3) (.1)
Lus10031684
[exp]
39 / 0.0007 AT5G62200 223 / 5e-75 Embryo-specific protein 3, (ATS3) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0321 PLAT PF06232 ATS3 Embryo-specific protein 3, (ATS3)
Representative CDS sequence
>Potri.003G107100.1 pacid=42784570 polypeptide=Potri.003G107100.1.p locus=Potri.003G107100 ID=Potri.003G107100.1.v4.1 annot-version=v4.1
ATGAAGGGAACTCTCTGCTTATCAATAATTTTCATCGCTCTCTTCTTCTCTGCAGACGCTAATGGCTTCTATGGCGGCGGCGGCGGCGATTGTGTATACG
CACTCTACGTAAAGACTGGATCAATAATGAAGGCAGGAACAGACTCAAAAATCAGCCTGACACTAGGAGACGCACAAGGCCGATCAGTATGGGTTCCAGA
CCTTCAATCATGGGGTTTAATGGAGCCCAAACACGACTACTACGAGCGTGCTAACCTTGACATCTTTAGTGGCCGCGGTCCGTGCATCAGTGCACCCATA
TGCCGCCTAAACTTGACCTCTGATGGCCAAGGGTCTCACCATGGCTGGTACTGTGACTACGTGGAAGTCACCTCCACAGGACCACACAAGGAGTGTAGCC
AGACTATCTTTTATGTTGATCAATGGCTGGCTGCTGATGTTCCACCCTTTAAGCTAACCGCCTTGCTTGATGGATGCAGAATCGGGGATGATGCCTTGAA
GAAGGGAAAAAATGGGAAGTTTGCTGTGGAGAATGTTAGAGGATCTGCTTTTTCTTGA
AA sequence
>Potri.003G107100.1 pacid=42784570 polypeptide=Potri.003G107100.1.p locus=Potri.003G107100 ID=Potri.003G107100.1.v4.1 annot-version=v4.1
MKGTLCLSIIFIALFFSADANGFYGGGGGDCVYALYVKTGSIMKAGTDSKISLTLGDAQGRSVWVPDLQSWGLMEPKHDYYERANLDIFSGRGPCISAPI
CRLNLTSDGQGSHHGWYCDYVEVTSTGPHKECSQTIFYVDQWLAADVPPFKLTALLDGCRIGDDALKKGKNGKFAVENVRGSAFS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G39730 Lipase/lipooxygenase, PLAT/LH2... Potri.003G107100
[exp]
0 1
AT5G19530 ACL5 ACAULIS 5, S-adenosyl-L-methio... Potri.008G151800
[exp]
1.41 0.9494
AT4G36930 bHLH SPT, bHLH024 SPATULA, basic helix-loop-heli... Potri.005G139700
[exp]
2.00 0.9370
AT5G61480 PXY, TDR TDIF receptor, PHLOEM INTERCAL... Potri.001G126100
[exp]
3.87 0.9408
AT1G69230 SP1L2 SPIRAL1-like2 (.1.2) Potri.017G095200
[exp]
5.47 0.9348
AT5G01580 OSH1 OAS HIGH ACCUMULATION 1, gamma... Potri.016G121900
[exp]
6.00 0.9247
AT2G40480 Plant protein of unknown funct... Potri.019G049201
[exp]
8.48 0.9276
AT5G59840 Ras-related small GTP-binding ... Potri.001G236100
[exp]
9.94 0.9219 Pt-RAB8.2
AT5G02420 unknown protein Potri.009G030200
[exp]
10.95 0.8961
AT2G36570 Leucine-rich repeat protein ki... Potri.006G117200
[exp]
11.74 0.9312
AT5G66920 SKS17 SKU5 similar 17 (.1) Potri.007G038300
[exp]
12.96 0.9300

Potri.003G107100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.