Plant FIBer expression Database

Potri.003G107400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G25170 190 / 1e-57 Uncharacterised conserved protein (UCP012943) (.1), Uncharacterised conserved protein (UCP012943) (.2)
AT5G61490 98 / 2e-23 Uncharacterised conserved protein (UCP012943) (.1)
AT5G61495 52 / 3e-08 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G126300
[exp]
412 / 3e-144 AT4G25170 184 / 3e-55 Uncharacterised conserved protein (UCP012943) (.1), Uncharacterised conserved protein (UCP012943) (.2)
Potri.014G057200
[exp]
110 / 4e-28 AT5G61490 86 / 1e-19 Uncharacterised conserved protein (UCP012943) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009654
[exp]
179 / 5e-53 AT4G25170 174 / 1e-51 Uncharacterised conserved protein (UCP012943) (.1), Uncharacterised conserved protein (UCP012943) (.2)
Lus10009018
[exp]
169 / 3e-47 AT5G61510 513 / 1e-178 GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
Lus10028185
[exp]
61 / 6e-10 AT2G44970 640 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Lus10014803
[exp]
56 / 2e-08 AT5G54540 139 / 8e-39 Uncharacterised conserved protein (UCP012943) (.1)
Lus10003594
[exp]
47 / 1e-05 AT5G54540 117 / 2e-30 Uncharacterised conserved protein (UCP012943) (.1)
PFAM info
Representative CDS sequence
>Potri.003G107400.1 pacid=42785105 polypeptide=Potri.003G107400.1.p locus=Potri.003G107400 ID=Potri.003G107400.1.v4.1 annot-version=v4.1
ATGCTCGGTAGAGGCACAGGCATGGGCGGTGGAAGCGGAGGAGGCAGCGTGTTAAGGGTCTTTGGTCGTGCTGTTGCTAGGGCTGGTGTTACCAATCTTC
AGGAACCCATCTCTACTACCAACTCATCATCTCCTAACACTAGTACCACTACTACTGTTACTTCACCCAGGGGAACCCGAAAGGTTATCTCCCCTAATAA
TTTGACTCTTTCTTCTTCTGGCTCCGCTCTCAGTCTTCCAATACCCGCTGATTCTGGTGGACCAGGTCCCACTTCCTGGTCTCCTTTTTCTGTCTCCCAC
TGTGATGATTACGACTGGGTTTCTGTTGATGACGGGAGTGACGAGGAGAGGCCTGTTGGGTTTGATGATGATTTTGTTTTTGGTCCTGTTCCTTCCATTG
ACGAAGTTCATGAAGCCGTCACTGCCCTTACCCATGTATTTGATGCCCCCTCGCATTCCCAACTCATTAGAGATAAATTTTCATGCACTGTGGACAAGGA
TTTAGCTTATCAAATTTCAGGCCCAACTTTGCTGAACCGAGTTTCTTCAGTTGGGTCAGAGTTAGATTGGAAGGAGCCTTCTCCTGTTCCGTGTGATCCA
AGAGCACTGCTCTGTTATGGATCTCAGAGAGTTCATGAAGCTTTCCGTTTGTTGCAGACAGAGTCATCTGTTCAGAAAATGGTTGTCTCATTATCTTCTG
ATAAAGCTGTTTGGGATGCTGTTTTGAATAATGCTGCCGTTCGGGAGCTGCGGGAAACCTACTATGCAGATGAAAACACTGATCCACCAACTTCTGAGAG
CTTGGCCGAGACTGGCGAAGAATCCAATCCAGCTTTGAATTTTGTCAAGTGGATATTTGATAACACAAGAGCGAGAGCCATGGAAATATTTGAGACAATA
ACAAAACTGGTGAACGAGTTTTTTAAGCCACCAGCTGGTGAGAAGACGTCAGCAGGCACCAAGGATCCATTTGAGGACAAGCTGAGAAGCTCATTCCTGC
TTTCCATAATGGTCCTGCTGATTGTAGTTGTGACTCGAGCCCAGAAGGCATGA
AA sequence
>Potri.003G107400.1 pacid=42785105 polypeptide=Potri.003G107400.1.p locus=Potri.003G107400 ID=Potri.003G107400.1.v4.1 annot-version=v4.1
MLGRGTGMGGGSGGGSVLRVFGRAVARAGVTNLQEPISTTNSSSPNTSTTTTVTSPRGTRKVISPNNLTLSSSGSALSLPIPADSGGPGPTSWSPFSVSH
CDDYDWVSVDDGSDEERPVGFDDDFVFGPVPSIDEVHEAVTALTHVFDAPSHSQLIRDKFSCTVDKDLAYQISGPTLLNRVSSVGSELDWKEPSPVPCDP
RALLCYGSQRVHEAFRLLQTESSVQKMVVSLSSDKAVWDAVLNNAAVRELRETYYADENTDPPTSESLAETGEESNPALNFVKWIFDNTRARAMEIFETI
TKLVNEFFKPPAGEKTSAGTKDPFEDKLRSSFLLSIMVLLIVVVTRAQKA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G25170 Uncharacterised conserved prot... Potri.003G107400
[exp]
0 1
AT5G04440 Protein of unknown function (D... Potri.008G030300
[exp]
5.65 0.9420
AT1G04420 NAD(P)-linked oxidoreductase s... Potri.008G167400
[exp]
6.00 0.9570
AT2G05310 unknown protein Potri.014G167300
[exp]
11.74 0.9441
AT5G08410 FTRA2 ferredoxin/thioredoxin reducta... Potri.010G255500
[exp]
14.83 0.9535
AT4G19985 Acyl-CoA N-acyltransferases (N... Potri.019G065400
[exp]
15.00 0.9449
AT3G09050 unknown protein Potri.006G096700
[exp]
22.58 0.9477
AT1G17650 GR2, GLYR2 glyoxylate reductase 2 (.1) Potri.003G040800
[exp]
23.81 0.9426
AT2G01320 ABCG7 ATP-binding cassette G7, ABC-2... Potri.010G115000
[exp]
25.92 0.9395
AT1G53800 unknown protein Potri.003G073400
[exp]
26.40 0.9358
AT5G57930 APO2, EMB1629 embryo defective 1629, ACCUMUL... Potri.006G183900
[exp]
27.12 0.9472

Potri.003G107400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.