Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61460 1238 / 0 SMC6B, ATRAD18, MIM STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B, hypersensitive to MMS, irradiation and MMC, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G07660 1193 / 0 SMC6A structural maintenance of chromosomes 6A (.1) AT5G15920 61 / 4e-09 EMB2782, SMC5 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262600 [exp] 69 / 2e-11 AT5G15920 1427 / 0.0 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027219 [exp] 1099 / 0 AT5G61460 1070 / 0.0 STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B, hypersensitive to MMS, irradiation and MMC, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038928 [exp] 61 / 3e-11 AT5G61460 66 / 3e-14 STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B, hypersensitive to MMS, irradiation and MMC, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038927 [exp] 67 / 1e-10 AT5G07670 516 / 5e-171 RNI-like superfamily protein (.1) Lus10029476 [exp] 60 / 1e-08 AT5G15920 1172 / 0.0 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1) Lus10039590 [exp] 60 / 1e-08 AT5G15920 1175 / 0.0 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF02463 [poplar] [flax] SMC_N RecF/RecN/SMC N terminal domain
Representative CDS sequence Show only first row Show all	>Potri.003G107700.8 pacid=42785113 polypeptide=Potri.003G107700.8.p locus=Potri.003G107700 ID=Potri.003G107700.8.v4.1 annot-version=v4.1 ATGGATGATTCTAGGGTTTTCGGGGATAGTAACATCCCTACCACTTTTCGGTCCGGTGTGGGTACCATCTCCAGGATCCGGTTAGAGAACTTCATGTGCC ATGATAACCTCCAAATTGAGCTTGACCAGTGGGTCAATTTTGTCACCGGTCGAAACGGAAGTGGCAAAAGTGCAATATTGACTGCTTTATGTATTGCATT TGGATGCCGGGCTAAAGGAACTCAAAGGGCCGCCACTTTGAAGGATTTTATCAAAACTGGTTGCAGTTATGCTGTTGTTGAAGTGGAAGTAAGAAACAGA GGAGAGGAGTCTTTTAAGCCAGATATCTATGGTGATTCCATAATAATAGAACGGAGAATCAACCAATCTTCCAGTACCACTGTTCTAAAGGATCACCAAG GAAGAAAAGTGGCTAGTCGAAGAGAGGATCTTCGGGAGCTCATAGAACATTTTAATATTGATGTTGAGAATCCTTGTGTAATAATGAGTCAAGACAAAAG CAGAGAGTTTCTGCATTCTGGGAATGAAAAAGACAAATTTAAGTTCTTTTTCAAGGCTACTCTTCTTCAACAAGTTAATGATCTTTTACTAAGTATTAAT GAACAACTGAAGTCTGCAAATGCACTTGTTGATGAACTGGAGGCTTCGATAAAACCCATAGAGAAGGAACTTACTGAGTTGCAAGGAAAGATAAAAAATA TGGAGCATCTAGAAGAAATGTCTCAGCAGGCACAACAGTTAAAGAAGAAGCTTGCATGGTCTTGGGTCTACAGTGTAGACAAGGAACTCCAGGAACAAAT GGTGAAGCTTGGAAAGCTTAAAGAACGCATACCCACTTGTCAAGCTAGAATTGATCATGAACTCATGAAGGTGGAGGAATTGAGAAAAACCTTCATAGAG AAGAAAGCCCAAACTGCACATATGGTGGAAAGAGCGAAGGAAGTGAGGAATAAACAGGATGAATTGCGTAATACTGTTTCCTTGGCAACGAAGAAGAAAC TTGAGTTAGAAAATGAGCACAATCGCCGAACCAATCAAATTCATAGCATGGTGAAACGTGTCAAGTTGCTTGAACAACAAGCCCGTGATATTCATGAGCA GCAAGTTAAAAATACACAGGCTGAAGAATGTGAAATAGAGGAAAAGCTTAAGGAACTTCAGGACATGATTGATGCTGCTGATTTCACACTTTCAAGGTTG AAGGAAGAAGAGAGTACCTTATTAGAAAGCGTGTCCAAGGGAATGGATGAAATTAGAAAGATTACTGAAGAGATTGAAGAGTATGGAAAGAAGGAACAGG AAATCCGTGCATACATCCGTGAGCTCCAGCTAAACAAAACCAACAAGGTTACAGCGTTTGGAGGAGATCGAGTGATTCAACTTTTACGTACAATTGAGAG ACATCACCAAAGATTTGGAAGCCCGCCGATTGGTCCAATTGGTGCTCATGTGACTTTAGCAAATGGTGATAGGTGGGCTCCTGCTGTTGAGAATGCTGTC GGGAAGTTGCTCAATGCTTTCATTGTGACAGACCATAGGGACTCTCTTCTTCTGAGAGGATGTGCAAGAGAAGCGAACTATAACAACCTGCAGATTATTA TATATGATTTCTCAAGACCAAGGCTGACCATACCATCTCACATGCTTCCGCAAACTAACCATCCAACTACATTTTCCGTTATCCGTTCTGACAATGATAC TATTCTAAATGTTTTAGTGGACATGGGAAGTGCTGAGAGGCAAGTGCTTGTAGAAGATTATGATGCAGGAAAAGCTGTTGCTTTTGAAAAACAGATCTCA AATCTAAAAGAGGTTTATACAATAGATGGTTATAAAATGTTTTCACGCGGGTCAGTCCAGACAGTTCTTCCCCCAAATAAGAAGCTTAGAGCTGGCCGTC TTTGTGGTTCATTTGATGATCAAATTAGGAATCTTGATCAATCTAAATCAAATGTTCAAAAGGAAGCTGATCAGTGCAGGAAGAGGAAACGAGACTCTGA GGCAAGCCTTCAGCATCTTCAACATGGGCTAAAGATTATGAAGGAGAAGTGCAGGAATGCTGAGCGGGATCTGGTATCTAAGAAACTAGGACTGCAGGAT GCAAAGAACTCGTATGCTTCTGCAACCAGTTCACAAGCTGCTGCATCAACTGTTGATGAGCTTCAACAAGAAATCTCAAGCATCCAAGAGGAGATACAAG AAAAGAAAATGCAGCTGGAGTCGCTCCAAGTCAGAATTAATGAAGCTGACTCAAAAGCCAGGGATCTTGAATTGACATTTGAAGATTTGCGTGAGTCAGT GAAAGAAGAAATCAACGCTATTGAGAAAGCAGAGAGTGAGCTGGTGAAGATTGAAAAAGATCTGCAATTTGCAGAAGCAGAAAAGGCCCGTTATGAAGGA GTAATGACTACCAGGGTTCTCCCTGATATTGAAATGGCGGAGGCACAATATCGGGAGCTTGAAGAGAATCGTAAGGAGAGCTGCAGAAAGGCTTCAATTA TATGTCCCGAGAGTGAGATTGAAGCTTTAGGAGGTTGTGATGGCAGCACCCCAGAGCAGCTCAGCGTGCATTTAAATAAACTGAACCAGAGACTTCAGAA TGAGTGCCAGCAGCATTCTGACTCTATTGATGACCTGAGGATGTTTTATCAGAAAAAAGAGCGTAAAATTTTGCGTAAACGGCAAACATACAGAGCTTTT CGTGAAAAGTTGAAGACTTGTGAGGAAGCCCTGAATTTGCGATGGAGCAAATTTCAAAGGAATGCAAGTGATTTGAAGCGCCAATTGACTTGGAATTTCA ATGGTCACTTAGGAGAGAAAGGGATTAGTGGGAGCATTAAAATTAGTTACGAAGAGAAGACCCTCAAAGTAGAGGTAAAAATGCCCCAAGATGCATCCTG CAGCTCTGTTCGTGACACTAGAGGGCTTTCAGGCGGTGAACGCTCTTTCTCAACATTATGCTTTGCATTAGCTCTTCATCAGATGACAGAAGCCTCATTC CGAGCGATGGACGAGTTTGATGTATTTATGGATGCTGTTAGTAGGAAAATTAGCTTAGATACCTTGGTGAAGTTTGCATTGGCCCAAGGTTCCCAGTGGA TATTTATCACTCCTCATGATATCAGTGGTGTAAAACATCATGAGAGGATAAAGAAGCAGCAGCTGGCAGCTCCACGTTCTTGA
AA sequence Show only first row Show all	>Potri.003G107700.8 pacid=42785113 polypeptide=Potri.003G107700.8.p locus=Potri.003G107700 ID=Potri.003G107700.8.v4.1 annot-version=v4.1 MDDSRVFGDSNIPTTFRSGVGTISRIRLENFMCHDNLQIELDQWVNFVTGRNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAVVEVEVRNR GEESFKPDIYGDSIIIERRINQSSSTTVLKDHQGRKVASRREDLRELIEHFNIDVENPCVIMSQDKSREFLHSGNEKDKFKFFFKATLLQQVNDLLLSIN EQLKSANALVDELEASIKPIEKELTELQGKIKNMEHLEEMSQQAQQLKKKLAWSWVYSVDKELQEQMVKLGKLKERIPTCQARIDHELMKVEELRKTFIE KKAQTAHMVERAKEVRNKQDELRNTVSLATKKKLELENEHNRRTNQIHSMVKRVKLLEQQARDIHEQQVKNTQAEECEIEEKLKELQDMIDAADFTLSRL KEEESTLLESVSKGMDEIRKITEEIEEYGKKEQEIRAYIRELQLNKTNKVTAFGGDRVIQLLRTIERHHQRFGSPPIGPIGAHVTLANGDRWAPAVENAV GKLLNAFIVTDHRDSLLLRGCAREANYNNLQIIIYDFSRPRLTIPSHMLPQTNHPTTFSVIRSDNDTILNVLVDMGSAERQVLVEDYDAGKAVAFEKQIS NLKEVYTIDGYKMFSRGSVQTVLPPNKKLRAGRLCGSFDDQIRNLDQSKSNVQKEADQCRKRKRDSEASLQHLQHGLKIMKEKCRNAERDLVSKKLGLQD AKNSYASATSSQAAASTVDELQQEISSIQEEIQEKKMQLESLQVRINEADSKARDLELTFEDLRESVKEEINAIEKAESELVKIEKDLQFAEAEKARYEG VMTTRVLPDIEMAEAQYRELEENRKESCRKASIICPESEIEALGGCDGSTPEQLSVHLNKLNQRLQNECQQHSDSIDDLRMFYQKKERKILRKRQTYRAF REKLKTCEEALNLRWSKFQRNASDLKRQLTWNFNGHLGEKGISGSIKISYEEKTLKVEVKMPQDASCSSVRDTRGLSGGERSFSTLCFALALHQMTEASF RAMDEFDVFMDAVSRKISLDTLVKFALAQGSQWIFITPHDISGVKHHERIKKQQLAAPRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Potri.003G107700 [exp]	0	1
AT5G47020			unknown protein		Potri.003G086200 [exp]	2.44	0.8313
AT1G69220		SIK1	Protein kinase superfamily pro...		Potri.010G157400 [exp]	6.24	0.7695	SIK1.1
AT2G36720			Acyl-CoA N-acyltransferase wit...		Potri.016G097300 [exp]	6.85	0.8353
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Potri.003G220800 [exp]	7.48	0.8347
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Potri.004G212700 [exp]	8.12	0.7972
AT3G05710		ATSYP43, SYP43	syntaxin of plants 43 (.1.2)		Potri.005G020800 [exp]	8.48	0.7390	SYP41.1
AT4G17150			alpha/beta-Hydrolases superfam...		Potri.006G000700 [exp]	10.86	0.7470
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Potri.007G066400 [exp]	12.00	0.8141	Pt-ABA3.1
AT1G05270			TraB family protein (.1)		Potri.007G121800 [exp]	14.42	0.8038
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Potri.006G164000 [exp]	14.49	0.7885

Compare expression of checked genes

Potri.003G107700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.