Plant FIBer expression Database

Potri.003G107800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G43090 290 / 2e-99 Aconitase/3-isopropylmalate dehydratase protein (.1.2)
AT3G58990 256 / 6e-86 IPMI1 isopropylmalate isomerase 1 (.1)
AT2G43100 252 / 3e-84 ATLEUD1, IPMI2 isopropylmalate isomerase 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007488
[exp]
293 / 2e-100 AT2G43090 312 / 5e-108 Aconitase/3-isopropylmalate dehydratase protein (.1.2)
Lus10028964
[exp]
291 / 2e-99 AT2G43090 309 / 1e-106 Aconitase/3-isopropylmalate dehydratase protein (.1.2)
Lus10007804
[exp]
207 / 3e-68 AT2G43090 205 / 6e-68 Aconitase/3-isopropylmalate dehydratase protein (.1.2)
Lus10004742
[exp]
0 / 1 AT2G43100 155 / 6e-72 isopropylmalate isomerase 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0364 Leu-IlvD PF00694 Aconitase_C Aconitase C-terminal domain
Representative CDS sequence
>Potri.003G107800.1 pacid=42786155 polypeptide=Potri.003G107800.1.p locus=Potri.003G107800 ID=Potri.003G107800.1.v4.1 annot-version=v4.1
ATGGCAGCCTGCCGCTCTACCACCACAATCTCCCTCTCCAGAAACCCTAGTTTCTCCACCACCAATCCCAAACCTTCCCTCTCTTTCCTCTCTCCTCCTT
GTCTCAAACTCCCTTCCATTCTCCCCTCCTTCAAACCCCTAACCTCCCACGCCCCACCTGACCAACTTCTCTCCATCCCACGCGCCACGGCCGCCGCCAC
CCCCACCACCACCCCCACCACTTCCTTCCACGGCCATTGCTATGTCGTCGGCGACAACATCGACACCGATCAAATTATCCCCGCCGAATACCTTACCCTT
GTCCCTTCCAAGCAAGAGGAATACGAAAAACTCGGATCCTACGCTTTAATCGGACTTCCGGCGACTTACAAAACCCGATTCATCGAAGCGAACCAAACGA
AAACGAAATACTCGATCGTGATTGGGGGCGAAAATTTTGGGTGCGGGTCTTCGCGTGAACACGCACCTGTAGCGCTTGGTGCAGCGGGGGCAGCTGCGGT
TGTTGCGGAATCGTATGCGAGGATTTTCTTTAGGAATTCAGTTGCGACGGGAGAGATATATCCGCTTGAATCGGAAGTTAGGATTTGTGAAGAGTGTAAG
ACTGGTGATTTGATTACGATTGAACTTGCGGAAAGTAAGTTGATTAACCATACGAGTGGAAAGGAGTATAAGTTGAAGCCTATTGGTGATGCTGGTCCTG
TTATCGAAGCTGGTGGCATTTTCGCTTATGCCAGGAAGACCGGAATGATTCCTTCCCAAGCACCATGA
AA sequence
>Potri.003G107800.1 pacid=42786155 polypeptide=Potri.003G107800.1.p locus=Potri.003G107800 ID=Potri.003G107800.1.v4.1 annot-version=v4.1
MAACRSTTTISLSRNPSFSTTNPKPSLSFLSPPCLKLPSILPSFKPLTSHAPPDQLLSIPRATAAATPTTTPTTSFHGHCYVVGDNIDTDQIIPAEYLTL
VPSKQEEYEKLGSYALIGLPATYKTRFIEANQTKTKYSIVIGGENFGCGSSREHAPVALGAAGAAAVVAESYARIFFRNSVATGEIYPLESEVRICEECK
TGDLITIELAESKLINHTSGKEYKLKPIGDAGPVIEAGGIFAYARKTGMIPSQAP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G43090 Aconitase/3-isopropylmalate de... Potri.003G107800
[exp]
0 1
AT1G26740 Ribosomal L32p protein family ... Potri.008G090100
[exp]
12.24 0.9025
AT1G09795 HISN1B, ATATP-P... ATP phosphoribosyl transferase... Potri.019G057200
[exp]
16.73 0.9126
AT5G24460 unknown protein Potri.015G002500
[exp]
18.16 0.8985
AT1G56050 GTP-binding protein-related (.... Potri.001G457900
[exp]
19.69 0.9130
AT5G60750 CAAX amino terminal protease f... Potri.003G133800
[exp]
19.97 0.8998
AT4G28730 GrxC5 glutaredoxin C5, Glutaredoxin ... Potri.002G254100
[exp]
22.51 0.9129 PtrcGrx_S12
AT1G56200 EMB1303 embryo defective 1303 (.1.2) Potri.011G163900
[exp]
23.81 0.9094
AT2G36130 Cyclophilin-like peptidyl-prol... Potri.016G075600
[exp]
26.55 0.8745
AT5G28750 Bacterial sec-independent tran... Potri.005G053400
[exp]
29.24 0.8936
AT5G42130 AtMfl1 MitoFerrinLike1, Mitochondrial... Potri.005G189600
[exp]
31.49 0.9091

Potri.003G107800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.