Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07670 525 / 0 RNI-like superfamily protein (.1) AT5G51380 492 / 3e-171 RNI-like superfamily protein (.1) AT5G51370 460 / 5e-159 RNI-like superfamily protein (.1.2) AT4G15475 81 / 4e-16 F-box/RNI-like superfamily protein (.1) AT2G25490 71 / 7e-13 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G23340 66 / 2e-11 RNI-like superfamily protein (.1) AT5G25350 54 / 2e-07 EBF2 EIN3-binding F box protein 2 (.1) AT5G01720 52 / 7e-07 RNI-like superfamily protein (.1) AT3G07550 50 / 2e-06 RNI-like superfamily protein (.1.2) AT4G07400 49 / 1e-05 VFB3 VIER F-box proteine 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G125800 [exp] 823 / 0 AT5G07670 509 / 4e-178 RNI-like superfamily protein (.1) Potri.002G143200 [exp] 478 / 3e-165 AT5G07670 466 / 3e-161 RNI-like superfamily protein (.1) Potri.014G059100 [exp] 466 / 2e-160 AT5G07670 451 / 2e-155 RNI-like superfamily protein (.1) Potri.006G254100 [exp] 77 / 8e-15 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.005G088800 [exp] 75 / 3e-14 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 69 / 3e-12 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.016G128400 [exp] 69 / 3e-12 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.019G123400 [exp] 62 / 7e-10 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.005G022600 [exp] 59 / 6e-09 AT5G27920 626 / 0.0 F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031165 [exp] 623 / 0 AT5G07670 530 / 0.0 RNI-like superfamily protein (.1) Lus10031742 [exp] 611 / 0 AT5G07670 518 / 0.0 RNI-like superfamily protein (.1) Lus10027218 [exp] 584 / 0 AT5G07670 514 / 7e-180 RNI-like superfamily protein (.1) Lus10031164 [exp] 580 / 0 AT5G07670 525 / 0.0 RNI-like superfamily protein (.1) Lus10031741 [exp] 576 / 0 AT5G07670 521 / 0.0 RNI-like superfamily protein (.1) Lus10038927 [exp] 572 / 0 AT5G07670 516 / 5e-171 RNI-like superfamily protein (.1) Lus10027217 [exp] 545 / 0 AT5G07670 508 / 3e-178 RNI-like superfamily protein (.1) Lus10002014 [exp] 80 / 2e-15 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10012764 [exp] 76 / 4e-14 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10040998 [exp] 74 / 7e-14 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G107900.2 pacid=42784729 polypeptide=Potri.003G107900.2.p locus=Potri.003G107900 ID=Potri.003G107900.2.v4.1 annot-version=v4.1 ATGTCGTTTTCAACTGAGAAACCTTTAAAGAAGAAGAGACCACCAAGGTGGTCAGACTTATGGCTCAAGAACACAAAACCATTGAAACATGTTATCTTTG CCATGCAGCTCCAGTCCCTCTCCAACCCAACAACTCCAACACCAACACCAACACCAACACCAACACCGAAACACCAACAGCAGAAACAACAACAAACAGA CCCCCCCACCAAATTCAAAGACAAAACAGGAACCCTAATCTCCAATCTCCCCCACATTGACCGCACACTTCTTTTAGGTGACGATCTCCTCTTAAAAATC CTATCTAAATTGCCAGATTCTCAGAGAAACCCTAATTCACTTGTTTGTAAACGGTGGCTTAATCTCCAAGGCCGTCTTGTTAGGTCTTTAAAGGTTTTAG ATTGGGAGTTTCTTGAATCTGGGCGTTTACTTTCAAGATTCCCAAATTTGACCCATGTGGATTTGCTTAATGGGTGTGTTGTTAGACCCCACGATTGCTG TGTTCTGTTGAGTCATAGGATTTTTAAGATGGATATAAATTCTGGGGTTTCTGGGTTTTTACCAGATTGGCGTGTTTGCGAAGAGAATTTGTTGCCTGTT GAGGTTGTTGATAGAGGGCTTAGAGGGTTAGCCTCAGGTTGTCCGAATTTGAGAAAGCTTGTGGTGGCTGGTGCTAGTGAGATGGGGTTGTTAAGTGTAG CTGAAGAGTGTTTGACTCTGCAAGAATTGGAGTTACATAGGTGTAATGACAACTTGTTGCGTGGGATTGCAGCGTGTGGGAATTTGCAAATTCTGAAACT TGTTGGAAATGTGGATGGGTTTTATGGTTCTTTGGTTTCAGATATTGGGTTAACGATTTTAGCTCAAGGGTCTAAGAGGTTGGTAAAGATCGAATTAAAT GGGTGCGAGGGTAGTTTTGATGGGATGAAGGCCATTGGACAGTGTTGTCAGATGCTTGAGGAATTAACTATTTGTGATCATCGGATGGATAATGGGTGGT TAGCTGGGCTTTCCTACTGCGAGAATTTGAAGACTTTGAGGTTTTTGTCGTGCAAGAGAATCGATCCCAGTCCAGGGCCGGATGATTATTTGGGGTGTTG TCCAGCTCTTGAGAGGTTGCATTTGCAGAAGTGTCAATTGAGGGATAAAAAGAGCCTTAAAGCGATGTTTAAGTTGTGTGAAACTGTGAGGGAGATTGTT GTTCAGGACTGTTGGGGATTGGATAATGATCTGTTTAGCCTGGCAAGAACTTGCAGGAGAGTGAAGTTATTATCTCTGGAAGGATGCTCCTTGTTGACAA CAGAAGGCCTGGAATCAGTACTCCTTACCTGGAATGAACTTGAACATCTTAGAATAGAGTCCTGCAAGAACATAAAGGACAGTGAAGTCAGTCCAACCCT TTCAACCTTGTTCTCTGTTCTTAAAGAGTTGAGATGGAGGCCAGATACCAGATCTCTTCTCGCATCAAGTCTTGTGGGAACTGGCATGGGAAAGAAAGGT GGCAAATTTTTCAAGAAGAACCTACGCCTGGATAATTATACGCAGATGATTCACACAGCTACTTTTTGA
AA sequence Show only first row Show all	>Potri.003G107900.2 pacid=42784729 polypeptide=Potri.003G107900.2.p locus=Potri.003G107900 ID=Potri.003G107900.2.v4.1 annot-version=v4.1 MSFSTEKPLKKKRPPRWSDLWLKNTKPLKHVIFAMQLQSLSNPTTPTPTPTPTPTPKHQQQKQQQTDPPTKFKDKTGTLISNLPHIDRTLLLGDDLLLKI LSKLPDSQRNPNSLVCKRWLNLQGRLVRSLKVLDWEFLESGRLLSRFPNLTHVDLLNGCVVRPHDCCVLLSHRIFKMDINSGVSGFLPDWRVCEENLLPV EVVDRGLRGLASGCPNLRKLVVAGASEMGLLSVAEECLTLQELELHRCNDNLLRGIAACGNLQILKLVGNVDGFYGSLVSDIGLTILAQGSKRLVKIELN GCEGSFDGMKAIGQCCQMLEELTICDHRMDNGWLAGLSYCENLKTLRFLSCKRIDPSPGPDDYLGCCPALERLHLQKCQLRDKKSLKAMFKLCETVREIV VQDCWGLDNDLFSLARTCRRVKLLSLEGCSLLTTEGLESVLLTWNELEHLRIESCKNIKDSEVSPTLSTLFSVLKELRWRPDTRSLLASSLVGTGMGKKG GKFFKKNLRLDNYTQMIHTATF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07670			RNI-like superfamily protein (...		Potri.003G107900 [exp]	0	1
AT1G24510			TCP-1/cpn60 chaperonin family ...		Potri.010G051700 [exp]	3.16	0.6826
AT1G06760			winged-helix DNA-binding trans...		Potri.010G076800 [exp]	4.24	0.6635
AT1G22920		CSN5A, JAB1, AJ...	ARABIDOPSIS JAB1 HOMOLOG 1, CO...		Potri.018G006100 [exp]	17.66	0.6507	AJH1.3
AT2G34480			Ribosomal protein L18ae/LX fam...		Potri.011G072400 [exp]	23.55	0.6596	RPL18.5
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Potri.008G042400 [exp]	24.71	0.6415	ATS9.3
AT4G24830			arginosuccinate synthase famil...		Potri.010G239000 [exp]	26.60	0.6585
AT3G05740		RECQI1	RECQ helicase l1 (.1)		Potri.005G019800 [exp]	27.49	0.6397
AT3G02820			zinc knuckle (CCHC-type) famil...		Potri.010G097400 [exp]	27.65	0.6359
AT1G19980			cytomatrix protein-related (.1...		Potri.002G022200 [exp]	28.10	0.6549
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Potri.006G078200 [exp]	29.22	0.6529	Pt-ACCC.2

Compare expression of checked genes

Potri.003G107900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.