Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61450 534 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G60760 44 / 0.0002 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45090 44 / 0.0002 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G125700 [exp] 730 / 0 AT5G61450 543 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G009200 [exp] 45 / 0.0001 AT5G60760 849 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G213500 [exp] 44 / 0.0002 AT5G60760 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031163 [exp] 558 / 0 AT5G61450 573 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031740 [exp] 556 / 0 AT5G61450 572 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021447 [exp] 50 / 1e-06 AT5G60760 422 / 2e-143 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016116 [exp] 50 / 1e-06 AT5G60760 424 / 3e-144 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13207 [poplar] [flax] AAA_17 AAA domain
Representative CDS sequence Show only first row Show all	>Potri.003G108000.6 pacid=42787142 polypeptide=Potri.003G108000.6.p locus=Potri.003G108000 ID=Potri.003G108000.6.v4.1 annot-version=v4.1 ATGACGAGAAAAGGGAAGGAAGTAGTGATATCAACAAGCCTTAATCACAACAGTGCCGAAGATGAAGAAGAAGAAGGCGGGTTCGATCACTCAAAAATCA ATGGACGACCTTTCTCTCCTTTCCCAAGTTTCTCCTCTCGCAATGCTTCCTCTAAATACGACTTTGTCAAGGTGAAGGTGTGGTTAGGTGAAAACGCTGA TCACTGCTATGTTTTATCAAGATTCCTGCTCAGCAGAATGTTGACTGTCACTAAGATACCCAATCATGTTGCTATTAAAATTGCTCTTGAACTCAAGAAG CTGCTTATCGATAACAGCCTGCTCGATGTCTCTCAGTCTGATTTGGAAGCCAATCTTTTCAAGCTTATGGAGCGGCGGGGGTATGGAGAAGAGTACATAA ATCATTACAAAATGATGACCAGATTTCACTATCAACGAGTGCCCTTGGTAATTCTTGTTTGTGGAACTGCCTGTGTTGGGAAGTCTACCATAGCTACCCA ACTTGCACAACGGCTGAATTTGCCTAATGTCTTGCAGACAGATATGGTGTATGAATTGCTGCGAACATCAACCGATGCACCATTGGTATCTACTCCTGTA TGGGCACGGGAATTCAGCTCTTCTGAGGAGTTAATTACTGAATTTTGTAGAGAATGCAGAATTGTTCGTAAAGGTTTGGCTGGTGATTTGAAGAAAGCAA TGAAAGATGGAAAGCCAATTATAATTGAGGGGATACATTTGGATCCAAGCATTTACTTGATGGATGAAGAAAATAAGTTACCAGCTAAAATGCCAGAAAA ATCTGAGACAAACACTGTGTCAGTGAGTCTGGATGATGATCCTGCAAGACAGTTGGAAAATAATTCTGTCAGTGAAAATAATACTGAAAATAGCAACTGC ACTACGGGATATTTGACCTCAGAAGAAGGGAAATCTGTTAACCTGGTAAATAAAGTTGTGGATTCACAGGAATCTATAGGTAAAGCTGGAAGCATTTCTG ACAGTAAAGGTGAAACTATTAAGGATCTTGAGGGAGATAGAAAGACTTCTGTTAGCTTAAAATCTGGTCCTGAACCAATAATTATACCAATAGTTCTGAA GATGGCTGAATTTGACCACAAGGCATTACTTGAGGAGTGGATCTCAACACGTTCATTTAGTGATAAATGCCCTGCTGAGGACAAAGATAAGTCAATTACC AATTTGAAAATCATTCAGGACTATCTCATCTCATTCAAGTCACAGGGTCTGACAGTTGCCAATATATCAGCCACAACATTCCCTCAAACACTGGATTGGC TGCATGGCTATCTTCTTCAGAGCATTGAGCAAGGCATTTCATCAGTGTCCAGTGAAAATGGTAGACAACCAGCTCAAAATTAG
AA sequence Show only first row Show all	>Potri.003G108000.6 pacid=42787142 polypeptide=Potri.003G108000.6.p locus=Potri.003G108000 ID=Potri.003G108000.6.v4.1 annot-version=v4.1 MTRKGKEVVISTSLNHNSAEDEEEEGGFDHSKINGRPFSPFPSFSSRNASSKYDFVKVKVWLGENADHCYVLSRFLLSRMLTVTKIPNHVAIKIALELKK LLIDNSLLDVSQSDLEANLFKLMERRGYGEEYINHYKMMTRFHYQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLVSTPV WAREFSSSEELITEFCRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDEENKLPAKMPEKSETNTVSVSLDDDPARQLENNSVSENNTENSNC TTGYLTSEEGKSVNLVNKVVDSQESIGKAGSISDSKGETIKDLEGDRKTSVSLKSGPEPIIIPIVLKMAEFDHKALLEEWISTRSFSDKCPAEDKDKSIT NLKIIQDYLISFKSQGLTVANISATTFPQTLDWLHGYLLQSIEQGISSVSSENGRQPAQN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61450			P-loop containing nucleoside t...		Potri.003G108000 [exp]	0	1
AT3G59910			Ankyrin repeat family protein ...		Potri.007G146500 [exp]	3.31	0.8270
AT3G49730			Tetratricopeptide repeat (TPR)...		Potri.002G176100 [exp]	7.93	0.7522
AT3G13780			SMAD/FHA domain-containing pro...		Potri.001G196700 [exp]	10.09	0.7737
AT1G72710		CKL2	casein kinase 1-like protein 2...		Potri.003G043500 [exp]	12.64	0.7384
AT1G02680		TAF13	TBP-associated factor 13 (.1)		Potri.014G122500 [exp]	18.16	0.7428
AT5G22450			unknown protein		Potri.009G164400 [exp]	18.16	0.7491
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Potri.013G028700 [exp]	18.65	0.7194
AT4G30790			unknown protein		Potri.006G180800 [exp]	19.49	0.7302
AT1G04790			RING/U-box superfamily protein...		Potri.003G176500 [exp]	21.02	0.7340
AT5G50970			transducin family protein / WD...		Potri.012G108100 [exp]	21.16	0.7174

Compare expression of checked genes

Potri.003G108000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.