Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 678 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 612 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT5G63930 491 / 3e-157 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 485 / 8e-155 Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 460 / 5e-144 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 454 / 7e-142 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT2G33170 451 / 1e-141 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G24240 442 / 3e-138 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G28650 433 / 5e-136 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G56040 427 / 4e-133 Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G261900 [exp] 732 / 0 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124100 [exp] 711 / 0 AT4G08850 711 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123700 [exp] 705 / 0 AT4G08850 688 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G124400 [exp] 702 / 0 AT4G08850 644 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G060168 [exp] 699 / 0 AT4G08850 735 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G060042 [exp] 698 / 0 AT4G08850 733 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G059600 [exp] 695 / 0 AT4G08850 734 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G099200 [exp] 686 / 0 AT4G08850 654 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124300 [exp] 683 / 0 AT4G08850 727 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031161 [exp] 926 / 0 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 655 / 0 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10008712 [exp] 652 / 0 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10003612 [exp] 608 / 0 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10020936 [exp] 602 / 0 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10002293 [exp] 581 / 0 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10004046 [exp] 580 / 0 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10031738 [exp] 569 / 0 AT4G08850 425 / 8e-137 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 562 / 0 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 543 / 1e-177 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.003G108200.1 pacid=42786413 polypeptide=Potri.003G108200.1.p locus=Potri.003G108200 ID=Potri.003G108200.1.v4.1 annot-version=v4.1 ATGGCCCGAGGAAGTTTTGTTTCTCTAGCAATTTTAATTGACTGGATAGTATTGTTGCTATTTTGCTGCAAAGCAAGTTTAGCTTCAAATGCAGCAGAAG CTGAGGCCTTGCTCAGATGGAAAGATAGTCTTGGAAACCAATCCATTCTCCAGTCGTGGGTCGCCCCAGCAAATGCCAATTCAAGTACCCCAAGTCCATG CCAGTGGCGTGGAATAACTTGTGATGACGCGGGAAATGTAACTCAAATAAATCTTCCGAACGTGGGCTTGACAGGTACCCTGCAATACTTAGATTTCTCT TCTTTAACAAATCTTCTTCGACTTGATCTTAGAGAAAATCAACTTACAGGAACCATTCCATCTAGCATTGGAACTCTTTACAAACTCCAATATCTTGATC TTGCCACAAATTTTCTTTATGGTACTCTACCTCTTTCTCTTGCTAATCTTACTCAGGCTTATGAGCTTGACTTTTCTCGAAACAACATAACTGGCATAAT AGACCCACGGTTATTCCCTGATGGGTCAGCCGCGAACAAAACTGGCCTTGTTAGCCTAAAAAATTTCCTCCTTCAAACTACTGGGCTTGGAGGTCGAATT CCTGAAGAAATAGGAAATTGTAAATTTCTGTCCCTTCTAGCTCTAGATGAGAATCGTTTTCACGGACCTATCCCTTCATCTTTAGGTAACTCGAGTGAGT TGACCGTTCTACGGCTTTCCAACAATCTTCTTTCAGGAAACATCCCACCAAATATAGGTACTTTGAGCAAGTTAACTGACTTGCGCTTGCTCACGAACCA ATTGTCTGGTTTCGTGCCTGCAGAATTAGGCAACCTTTCATCATTAACTGTTCTACACCTGGCCGAGAATAACTTCACAGGCCATTTGCCGCAGCAAGTG TGCCAAGGTGGAAAGCTTGTCAACTTCAGCGCCGCCTTTAACAATTTCTCTGGTCCAATCCCGGCAAGCCTAAAAAATTGCCACACCTTATATAGAGTTA GGCTTGAACACAACCAACTGTCGGGGTTTCTAGAACAAGATTTTGGAGTGTATCCAAACCTCACTTATATTGACCTAAGTTTCAACAGGGTAAGAGGCGA GCTGTCACCCAAATGGGGAGAGTGCAAGAAACTGACTGTTCTGAGAGTCGCTGGAAATTTGCTTGGTGGTAAAATCCCTGATGAGGTTGTTCTGCTAAAC CAACTAAGAGTGATTGACCTCTCTTCAAATCAAATTTTTGGAGAGTTGCCAGCACAACTTGGAAAATTGTCCAACCTGTTGGTTCTAAATCTGAAAGATA ACATGCTTTCAGGACAGGTGCCAGTGGGAATTGACGGCCTGTCCAGCTTGGAGAATCTAGACCTCTCTTTGAACATGCTAAGCGGGCCAATTCCATATCA AATTGGAGAATGCTCTAAACTTCGATTTTTAAGCTTGGGCAGGAATAGGTTAAATGGGACAATCCCCTATCAAATCGGAAATCTTGTAGGTTTACACGAC TTGCTAGATTTGGGCTATAATTTGCTTTCTGGAGGGATACCCTCTCAGCTCGCAAAGCTTACAAGTTTGGCGCAGCTGAACTTGTCCCACAATAATCTCA GTGGTTCAATTCCTGCATCTCTCAGCAACATGTTGAGCTTGGTTGCTGTCAACTTTTCATACAACAATTTAGAAGGTCCACTTCCTGATAGCAGCATCTT TCATTTAGTTGAGCCGAATTCATATAGTAACAATAGAGACTTGTGTGGTGAAGTTCAGGGTTTGAGACGCTGCACCATTAGAGCCAATGAAAAGGGTGGG GGGGATAAAAAAAGCAAACTTGTTATTATTGTTGCTTCGATAACAAGTGCCTTGTTTCTTTTACTCGCATTGGTTGGTATTATTGCATTTCTCCACCATC GGAACTCCAGAAATGTCTCAGCACGTGAAAGCAGATCAAGGAGGGAAATTCCCTTACCAATATGGTTTTTTAAAGGGAAAATTGCGTACGGAGATATCAT TGAAGCTACAAAGAACTTTGATGACAAGTACTGCATTGGGGAGGGAGGAACCGGAAAGGTTTATAAAGCAGAAATGTCAGATGGTCAAGTGTTTGCAGTG AAAAGGCTGAATTATCTGGTTCAAGACGAAGAGATTGAGACTACAAAAAGCTTTAGCAATGAGGTTGAAGCTTTAACAGAATTACGCCATCGCAACATAG TGAAACTCCATGGATTTTGTTCTCAAGGAAGGCACGCATTCTTGATTTATGAATTTTTGGAGAGGGGTAGTTTGGCTGGCATGCTAAGCGATGAAGAAGG AGCCAGGGAGTTGGATTGGGGAAAAAGGATAGCGGTTGTTAAGGGCATAGCTCATGCTTTATCTTATATGCATCATGATTGTGTTCCACCTATAGTTCAT CGAGACATATCAAGCAATAATGTCTTACTGAACTCTGAACTTGAGGCTCATGTTTCTGATTTTGGCACGGCAAGGTTTCTGAAGCCTGAGTCATCAAATT GGACAGCAATTGCAGGCACCTATGGATATATTGCTCCAGAGCTTGCTTACACAATGGAAGTGAATGAGAAATCCGATGTTTATAGCTTTGGGGTGTTGGC ATTCGAAGTTCTGATGGGAAAGCATCCAGGGGACCTCATTTCCTATCTACATTCATCTGCTAATCAAGAAATCCACTTCGAAGATGCGTCAGATCCCCGT CTCTCACCTCCTGCAGAACGAAAAGCTGTTGATCTATTGTCCTGTATCATAACTCTTGCTCGTTTATGTGTATGTGTTGACCCTCAATCTCGACCAACCA TGCGAACTGTGTCTCAGCAGCTCGAAATGAAGGCTGCTGGTTCCGAATAA
AA sequence Show only first row Show all	>Potri.003G108200.1 pacid=42786413 polypeptide=Potri.003G108200.1.p locus=Potri.003G108200 ID=Potri.003G108200.1.v4.1 annot-version=v4.1 MARGSFVSLAILIDWIVLLLFCCKASLASNAAEAEALLRWKDSLGNQSILQSWVAPANANSSTPSPCQWRGITCDDAGNVTQINLPNVGLTGTLQYLDFS SLTNLLRLDLRENQLTGTIPSSIGTLYKLQYLDLATNFLYGTLPLSLANLTQAYELDFSRNNITGIIDPRLFPDGSAANKTGLVSLKNFLLQTTGLGGRI PEEIGNCKFLSLLALDENRFHGPIPSSLGNSSELTVLRLSNNLLSGNIPPNIGTLSKLTDLRLLTNQLSGFVPAELGNLSSLTVLHLAENNFTGHLPQQV CQGGKLVNFSAAFNNFSGPIPASLKNCHTLYRVRLEHNQLSGFLEQDFGVYPNLTYIDLSFNRVRGELSPKWGECKKLTVLRVAGNLLGGKIPDEVVLLN QLRVIDLSSNQIFGELPAQLGKLSNLLVLNLKDNMLSGQVPVGIDGLSSLENLDLSLNMLSGPIPYQIGECSKLRFLSLGRNRLNGTIPYQIGNLVGLHD LLDLGYNLLSGGIPSQLAKLTSLAQLNLSHNNLSGSIPASLSNMLSLVAVNFSYNNLEGPLPDSSIFHLVEPNSYSNNRDLCGEVQGLRRCTIRANEKGG GDKKSKLVIIVASITSALFLLLALVGIIAFLHHRNSRNVSARESRSRREIPLPIWFFKGKIAYGDIIEATKNFDDKYCIGEGGTGKVYKAEMSDGQVFAV KRLNYLVQDEEIETTKSFSNEVEALTELRHRNIVKLHGFCSQGRHAFLIYEFLERGSLAGMLSDEEGARELDWGKRIAVVKGIAHALSYMHHDCVPPIVH RDISSNNVLLNSELEAHVSDFGTARFLKPESSNWTAIAGTYGYIAPELAYTMEVNEKSDVYSFGVLAFEVLMGKHPGDLISYLHSSANQEIHFEDASDPR LSPPAERKAVDLLSCIITLARLCVCVDPQSRPTMRTVSQQLEMKAAGSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08850			Leucine-rich repeat receptor-l...		Potri.003G108200 [exp]	0	1
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Potri.010G234700 [exp]	2.00	0.8485	CTR1.4
AT2G21100			Disease resistance-responsive ...		Potri.009G131000 [exp]	3.46	0.8163
AT1G07710			Ankyrin repeat family protein ...		Potri.005G069400 [exp]	5.00	0.8039
AT1G64385			unknown protein		Potri.003G139400 [exp]	5.29	0.7976
AT1G29270			unknown protein		Potri.004G060800 [exp]	5.47	0.8403
AT4G34040			RING/U-box superfamily protein...		Potri.007G045500 [exp]	7.21	0.7838
					Potri.005G121975 [exp]	8.00	0.7358
AT5G24580			Heavy metal transport/detoxifi...		Potri.012G007300 [exp]	8.48	0.8007
AT3G42640		AHA8	H\(+\)-ATPase 8, H\(+\)-ATPase...		Potri.006G005900 [exp]	15.19	0.7357	Pt-AHA6.2
AT3G62270			HCO3- transporter family (.1)		Potri.008G100300 [exp]	16.49	0.7780

Compare expression of checked genes

Potri.003G108200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.