Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CPE902,Pt-SMC2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62410 1732 / 0 TTN3, ATSMC4, ATCAP-E1, SMC2 TITAN 3, structural maintenance of chromosomes 2 (.1) AT3G47460 1705 / 0 ATSMC2 Structural maintenance of chromosomes (SMC) family protein (.1) AT2G27170 125 / 7e-29 SMC3, TTN7 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) AT3G54670 116 / 4e-26 ATSMC1, TTN8 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) AT5G48600 104 / 3e-22 ATSMC4, SMC4, ATCAP-C, ATSMC3 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) AT5G15920 49 / 3e-05 EMB2782, SMC5 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1) AT5G61460 44 / 0.0009 SMC6B, ATRAD18, MIM STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B, hypersensitive to MMS, irradiation and MMC, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G125000 [exp] 2088 / 0 AT5G62410 1771 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1) Potri.009G155200 [exp] 172 / 3e-43 AT2G27170 1665 / 0.0 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) Potri.017G083200 [exp] 96 / 1e-19 AT5G48600 1737 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Potri.001G262600 [exp] 67 / 6e-11 AT5G15920 1427 / 0.0 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1) Potri.005G224900 [exp] 50 / 8e-06 AT3G54670 1540 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027215 [exp] 1856 / 0 AT3G47460 1795 / 0.0 Structural maintenance of chromosomes (SMC) family protein (.1) Lus10038926 [exp] 171 / 3e-46 AT2G45010 342 / 4e-118 PLAC8 family protein (.1.2) Lus10022923 [exp] 123 / 6e-28 AT3G54670 1603 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10024895 [exp] 122 / 1e-27 AT3G54670 1604 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10036169 [exp] 118 / 2e-26 AT2G27170 1368 / 0.0 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) Lus10030681 [exp] 94 / 4e-19 AT5G48600 1723 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Lus10005240 [exp] 94 / 7e-19 AT5G48600 1804 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Lus10013583 [exp] 79 / 4e-15 AT3G54670 410 / 2e-133 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10039590 [exp] 64 / 6e-10 AT5G15920 1175 / 0.0 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1) Lus10029476 [exp] 63 / 1e-09 AT5G15920 1172 / 0.0 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06470 [poplar] [flax] SMC_hinge SMC proteins Flexible Hinge Domain CL0023 [poplar] [flax] P-loop_NTPase PF13476 [poplar] [flax] AAA_23 AAA domain
Representative CDS sequence Show only first row Show all	>Potri.003G108400.1 pacid=42785416 polypeptide=Potri.003G108400.1.p locus=Potri.003G108400 ID=Potri.003G108400.1.v4.1 annot-version=v4.1 ATGTATATAAAGGAGATATGTTTAGAGGGGTTCAAATCTTACGCAACAAGAACAGTAGTACAAGGATTCGACCCCTTTTTCAATGCAATTACGGGGCTAA ATGGGTCTGGCAAGTCGAATATTCTGGATTCAATTTGTTTTGTTTTGGGTATAACTAATTTGCAGCAAGTTAGGGCATCCAATTTGCAGGAGTTAGTGTA CAAGCAAGGACAGGCAGGGATTACTAAAGCTACAGTGTCAATTGTGTTTGATAATTCTGACAGGAATAGGAGTCCTCTTGGGTATGAAGATCATTCAGAG ATTACAGTTACTAGACAGATTGTGGTCGGTGGAAGGAACAAGTATCTGATCAATGGAAAGCTGGCCCAGCCTAGTCAAGTCCAAAACCTTTTTCATTCAG TGCAGCTGAATGTTAACAATCCACATTTTCTCATTATGCAAGGACGCATTACTAAGGTCTTGAACATGAAACCTCCAGAGATCTTATCAATGCTTGAAGA GGCTGCTGGGACAAGAATGTACGAGACAAAAAAAGAGTCTGCGTTGAAAACTCTAGAGAAGAAGCAGAGCAAGGTGGATGAAATTAATAAGCTTCTCGAC CAGGAGATACTGCCAGCTTTGGAGAAGTTGAGGAAGGAGAGGATGCAATATATGCAATGGGCCAACGGAAATTCTGAATTAGATCGACTCAAAAGGTTTT GCATTGCTTATGATTATGTTCAAGCAGTGAAAATTAGAGACAGCGCCGTTGTTGAGGTGGAACATATGAAGGGAAAAATTGCTGAGATCGACACTAGTGC AGAACAGATGCTGGTGGAAATACAGCAAAAGGAGACGGAAATATCAAAATTGGCTGCTGAAAAGGAAGCCAGTATGGGCGGGGAAGTAAAAACTCTGTCA GAGAACGTAGATGTGCTTGCTCAAGATCTTGTGCGAGAGGTATCGGTTTTGAATAATAAAGAGGATACTTTAAGGAGTGAATGTGAGAGTGCTGAAAAGA TTGTTCACAGTATTGAAGACTTAAAGCAGTCTGTTGAGGAGAGGGCTGCTGCAGTTAAAAAGTCTGAGGAAGGAGCAGCTGATCTCAAAAGGAGAGTTGG AGAACTTTCCAATAGTTTGGAAAACTATGAGAAGGAATACCAAGGTGTGCTAGCTGGGAAGAGCAGTGGTAGTGAGGAGAAATGCCTTGAAGATCAACTG GGTGAAGCAAAGTATGCTGTTGGAAATGCTGAAACAGAGTTGAAACAGTTGAAAACAAAAATTAGCCATTGTGAGAAAGAGCTGAAAGAGAAAACGCATC AGTTAATGTCAAAGAATGAAGAAGCTGTTGCTGTAGAGAATGAGCTTAGTGCTAGAAGGAAAGATGTCGAAAATGCTAAATCAGCGCTGGAATCTCTTTC ATATAAGGAAGGCCAGATGGAAGCTTTACAGAAGGATTGTGCATCCGAATTGAAACTAGTGCAGAAGTTGAAAGATGAAATACGAGACCTTTCGGCGCAG CTATCAAATGTTCAATTCATATACCGTGATCCCGTGAGAAACTTTGATAGGTCGAAAGTAAAAGGCGTGGTAGCTAAACTAATTAAAGTAAATGACAGCT CCACAATGACTGCCCTAGAGGTTACTGCAGGTGGAAAGTTATTTAATGTTGTTGTGGACACTGAGAGCACTGGAAAGCAACTTCTTCAAAATGGTGATCT CCGTAGAAGAGTGACAATTATCCCCTTAAACAAAATTCAATCCCATACTGTACCCATTAGAGTTCAGCAGGCTGCTGTTAGATTGGTTGGCAAGGAGAAT GCTGAACTGGCACTTACTTTGGTTGGCTACGATGAGGAATTGAAGACTGCTATGGAATATGTTTTTGGTTCAACATTTGTTTGCAAAAACATTGACGCTG CAAAGGAGGTTGCTTTTAGTCGAGAAATCCGCACTCCTAGTGTCACTCTTGAAGGCGATATCTTCCAGCCAAGTGGTCTTTTAACTGGTGGAAGTCGCAA GGGTGGTGGCGATCTGTTAAGGCAACTCCATGAATTGGCAGAGGCTGAATCAAATCTCACACTACATCAGAGAAGGTTATCTGAAATAGAAGCAAAGATT ACAGAGCTCTTGCCGGTCCATAAAAAGTTTGCGGACCTTAAAAAGCAGTTAGAGCTTAAGCTGTATGATCTTTCATTATTTCAGGGCAGGGCTGAGCAAA ACGAGCATCATAAGCTTGGAGAAGTAGTAAAGAAGATTGAACAAGAGCTTGAAGAAGCAAAGTCTGCAGTCAAAGAAAAACAAATTTTGTACAATGAGTG TGTTAATACAGTGTCAATGCTTGAAAAATCTATCAAAGAGCACGATAATAATCGAGAAGGCAAGCTTAAAGACTTGGAGAAACAAATTAAGGCTACAAAA GCACAAATGCAGTCAGTTTCAAAGGACCTCAAGGGGCATGAAAATGAAAGGGAGAGACTTATCATGGAACAGGAAGCAGTCATGAAGGAACATGCATCTT TGGAGAGTCAATTAGGTGCTTTGAGAGCACAAATCAGCTGTCTTAATTTGGAATTAGAAGAACAAAAGGCCAAGGTTGCTTCCACGCGCAATAATCATGA TCAGGTTCAATCTGAGCTCAATGCAATCCGTCTAAAGATGAAGGAGCGTGATTCCCAAATTAGTAGCATTCTCAAGGAGCAGCAAAAACTTCAACATAAA CTGAGTGAGACTAAGCTTGACAGGAAGAAGTTGGAGAATGAGGTGAAGAGAATGGAAATGGAGCAGAAAGATTGCTCTATGAAGGTGGACAAATTGATAG AGAAGCATGCCTGGATTGCTTCTGAGAAGCAGCTATTTGGGAGAAGTGGGACTGATTATGATTTTCTGTCACTCAATCCTAGTAAAGCAAAGGAGGAACT TGAGAAATTGCAAGCAGAGCAATCAGGGCTCGAGAAAAGGGTGAACAAGAAAGTTATGGCAATGTTTGAAAAAGCAGAAGACGAGTACAACGATTTGATG TCAAAGAAGAACATCATAGAGAATGACAAGTCTAAAATAAATAAAGTGATTGAAGAGCTAGACGAGAAGAAGAAGGAGACTCTCAAAGTTACTTGGGTTA AAGTGAATAATGACTTTGGATCTATCTTTTCCACCCTATTGCCGGGCACCATGGCAAAGCTAGAACCTCCCGAAGGTTGCAGTTTCCTAGATGGTCTTGA GGTTCGTGTTGCTTTTGGAGGTGTCTGGAAACAATCGCTGTCTGAATTAAGTGGAGGTCAACGCTCTCTGCTTGCTTTATCTATAATCTTGGCATTACTT CTCTTCAAGCCAGCTCCACTTTATATTCTAGATGAGGTCGATGCGGCTCTTGACTTAAGCCACACACAGAACATAGGGAGAATGATCAAAGCTCACTTCC CACACTCCCAGTTTATCGTGGTTTCACTAAAAGAAGGCATGTTCAACAATGCTAATGTTCTTTTCCGGACAAAATTTGTGGATGGTGTTTCCACTGTACA GAGGACTGTTGCCGCTAAGCAGAACTTGTGA
AA sequence Show only first row Show all	>Potri.003G108400.1 pacid=42785416 polypeptide=Potri.003G108400.1.p locus=Potri.003G108400 ID=Potri.003G108400.1.v4.1 annot-version=v4.1 MYIKEICLEGFKSYATRTVVQGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSIVFDNSDRNRSPLGYEDHSE ITVTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKESALKTLEKKQSKVDEINKLLD QEILPALEKLRKERMQYMQWANGNSELDRLKRFCIAYDYVQAVKIRDSAVVEVEHMKGKIAEIDTSAEQMLVEIQQKETEISKLAAEKEASMGGEVKTLS ENVDVLAQDLVREVSVLNNKEDTLRSECESAEKIVHSIEDLKQSVEERAAAVKKSEEGAADLKRRVGELSNSLENYEKEYQGVLAGKSSGSEEKCLEDQL GEAKYAVGNAETELKQLKTKISHCEKELKEKTHQLMSKNEEAVAVENELSARRKDVENAKSALESLSYKEGQMEALQKDCASELKLVQKLKDEIRDLSAQ LSNVQFIYRDPVRNFDRSKVKGVVAKLIKVNDSSTMTALEVTAGGKLFNVVVDTESTGKQLLQNGDLRRRVTIIPLNKIQSHTVPIRVQQAAVRLVGKEN AELALTLVGYDEELKTAMEYVFGSTFVCKNIDAAKEVAFSREIRTPSVTLEGDIFQPSGLLTGGSRKGGGDLLRQLHELAEAESNLTLHQRRLSEIEAKI TELLPVHKKFADLKKQLELKLYDLSLFQGRAEQNEHHKLGEVVKKIEQELEEAKSAVKEKQILYNECVNTVSMLEKSIKEHDNNREGKLKDLEKQIKATK AQMQSVSKDLKGHENERERLIMEQEAVMKEHASLESQLGALRAQISCLNLELEEQKAKVASTRNNHDQVQSELNAIRLKMKERDSQISSILKEQQKLQHK LSETKLDRKKLENEVKRMEMEQKDCSMKVDKLIEKHAWIASEKQLFGRSGTDYDFLSLNPSKAKEELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLM SKKNIIENDKSKINKVIEELDEKKKETLKVTWVKVNNDFGSIFSTLLPGTMAKLEPPEGCSFLDGLEVRVAFGGVWKQSLSELSGGQRSLLALSIILALL LFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVAAKQNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62410		TTN3, ATSMC4, A...	TITAN 3, structural maintenanc...		Potri.003G108400 [exp]	0	1	CPE902,Pt-SMC2.2
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Potri.007G138600 [exp]	2.44	0.9283
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Potri.006G251200 [exp]	3.00	0.9264	Pt-CPP1.22
AT3G57060			binding (.1.2)		Potri.006G041500 [exp]	3.74	0.9332
AT1G77720		PPK1	putative protein kinase 1 (.1)		Potri.002G087600 [exp]	4.58	0.8816
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Potri.004G185700 [exp]	5.56	0.8643
AT5G65360			Histone superfamily protein (....		Potri.003G207700 [exp]	6.00	0.8991
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Potri.010G055900 [exp]	6.32	0.9107
AT1G27880			DEAD/DEAH box RNA helicase fam...		Potri.010G056500 [exp]	6.32	0.9055
AT2G21790		ATRNR1, RNR1, C...	CRINKLY LEAVES 8, RIBONUCLEOTI...		Potri.007G076700 [exp]	7.00	0.9005
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Potri.002G114700 [exp]	7.81	0.8323

Compare expression of checked genes

Potri.003G108400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.