Plant FIBer expression Database

Potri.003G109000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G51410 345 / 2e-118 LUC7 N_terminus domain-containing protein (.1.2.3)
AT5G17440 69 / 6e-13 LUC7 related protein (.1)
AT3G03340 69 / 9e-13 UNE6 unfertilized embryo sac 6, LUC7 related protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G124300
[exp]
433 / 5e-153 AT5G51410 350 / 2e-120 LUC7 N_terminus domain-containing protein (.1.2.3)
Potri.019G055000
[exp]
78 / 1e-15 AT5G17440 438 / 6e-153 LUC7 related protein (.1)
Potri.013G084800
[exp]
72 / 5e-14 AT5G17440 473 / 2e-166 LUC7 related protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031732
[exp]
385 / 5e-134 AT5G51410 381 / 1e-132 LUC7 N_terminus domain-containing protein (.1.2.3)
Lus10027212
[exp]
372 / 8e-129 AT5G51410 380 / 2e-132 LUC7 N_terminus domain-containing protein (.1.2.3)
Lus10038924
[exp]
371 / 1e-128 AT5G51410 382 / 3e-133 LUC7 N_terminus domain-containing protein (.1.2.3)
Lus10031156
[exp]
357 / 4e-123 AT5G51410 360 / 1e-124 LUC7 N_terminus domain-containing protein (.1.2.3)
Lus10026846
[exp]
73 / 4e-14 AT5G17440 522 / 0.0 LUC7 related protein (.1)
Lus10020225
[exp]
71 / 3e-13 AT3G03340 516 / 1e-179 unfertilized embryo sac 6, LUC7 related protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03194 LUC7 LUC7 N_terminus
Representative CDS sequence
>Potri.003G109000.2 pacid=42787187 polypeptide=Potri.003G109000.2.p locus=Potri.003G109000 ID=Potri.003G109000.2.v4.1 annot-version=v4.1
ATGGACCTTCAACGCGCTATGCTAGATGAACTCATGGGTGCAGATCGTAATTTGACGGAGGAAGAGAGAAAAGATTACAAGGAAATAACATGGGATTCAA
AGGAGGTTTGTGCCTATTACATGGCTCGGTTTTGTCCTCATGACCTCTTTGTCAACACCAAGAGTGATCTTGGACCATGTGATAGAGTTCATGATCCAAA
GTTGAAAGAAAGCTTTGAGAAGTCCCCAAGTCATGATGCATATCTTGCCAAATTTGAAGCTGAACTTGCTCTGAGATGTGAGAAATTGGTTATGGAATTG
GATAGAAGAGTTAGGCGTGGACGAGAACGCCTAGCTCAAGGGGATGAACCAGTAGCACCTCCTCCGCTGTCAGCTGACAAGTCTGAACGGTTATCCGTGG
TGGAAGAGAAAATAAAAAACCTACTGGTGCAAGTGGAAGCCCTTGGTGAAGTTGGGAAGGTGGATGAAGCTCAAGCTCTTATGAAAAAGGTGGATGAACT
CAATGCTGAGAAAGCACTGATTCAATCCCAGAATGATAAAGTATTGGTGGTTCCACAGGAGAAAAAGATGGCTTTGTGTGAGATTTGTGGTTCTTTTCTA
GTTGCGAATGATGCTGCAGAGAGAACTCAGTCTCATGTCACGGGGAAGCAGCACATTGGATACGGGATGGTCCGGGATTATATCACCGAGTACAAGGAAG
CTAAGGAGAAGGCAAGGGAAGAGGAAAGACTAGCAAGGGAAAAAGAAGCCGGAGAACGGAAGAAACCAAGGGAGAAGGAATATGAGAGTAGTAGTAGGAG
GAGTGATTCAGGTGATAGGGATCGGTATAGAGAAAGGGAGCGGGACCGGGACCGAGATCGTGAAAGGTCAAGGGAGTGGAATGGTAGGGGCAGTCGAGGT
GATTGGAGGACTAGGAATGGAAGAGATGGTGGGAAGGATAGGCATCGTTATCGGAGCAGGTCACGTTCCCCTGTTAGGCATGATCGCAGGAGGTCACCTA
GAAGTCCAGTTCGCCCATATTAG
AA sequence
>Potri.003G109000.2 pacid=42787187 polypeptide=Potri.003G109000.2.p locus=Potri.003G109000 ID=Potri.003G109000.2.v4.1 annot-version=v4.1
MDLQRAMLDELMGADRNLTEEERKDYKEITWDSKEVCAYYMARFCPHDLFVNTKSDLGPCDRVHDPKLKESFEKSPSHDAYLAKFEAELALRCEKLVMEL
DRRVRRGRERLAQGDEPVAPPPLSADKSERLSVVEEKIKNLLVQVEALGEVGKVDEAQALMKKVDELNAEKALIQSQNDKVLVVPQEKKMALCEICGSFL
VANDAAERTQSHVTGKQHIGYGMVRDYITEYKEAKEKAREEERLAREKEAGERKKPREKEYESSSRRSDSGDRDRYRERERDRDRDRERSREWNGRGSRG
DWRTRNGRDGGKDRHRYRSRSRSPVRHDRRRSPRSPVRPY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G51410 LUC7 N_terminus domain-contain... Potri.003G109000
[exp]
0 1
AT4G20740 EMB3131 EMBRYO DEFECTIVE 3131, Pentatr... Potri.003G203100
[exp]
1.00 0.8834
AT5G02520 unknown protein Potri.004G077400
[exp]
2.00 0.8355
AT1G04300 TRAF-like superfamily protein ... Potri.008G163300
[exp]
3.00 0.8431
Potri.008G119000
[exp]
5.29 0.8209
AT3G23900 RNA recognition motif (RRM)-co... Potri.017G058300
[exp]
9.48 0.8057
AT3G23900 RNA recognition motif (RRM)-co... Potri.001G319000
[exp]
9.79 0.8265
AT2G18760 CHR8 chromatin remodeling 8 (.1) Potri.005G226500
[exp]
11.22 0.7864
AT5G55100 SWAP (Suppressor-of-White-APri... Potri.001G356800
[exp]
12.00 0.8099
AT1G15340 MBD10 methyl-CPG-binding domain 10 (... Potri.001G192300
[exp]
13.11 0.7459
AT2G15900 Phox-associated domain;Phox-li... Potri.004G146600
[exp]
13.96 0.7977

Potri.003G109000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.