Plant FIBer expression Database

Potri.003G109100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G51430 1269 / 0 EYE EMBRYO YELLOW, conserved oligomeric Golgi complex component-related / COG complex component-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031155
[exp]
1374 / 0 AT5G51430 1332 / 0.0 EMBRYO YELLOW, conserved oligomeric Golgi complex component-related / COG complex component-related (.1)
Lus10031731
[exp]
1373 / 0 AT5G51430 1333 / 0.0 EMBRYO YELLOW, conserved oligomeric Golgi complex component-related / COG complex component-related (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0294 Sec10 PF10191 COG7 Golgi complex component 7 (COG7)
Representative CDS sequence
>Potri.003G109100.1 pacid=42786581 polypeptide=Potri.003G109101.1.p locus=Potri.003G109100 ID=Potri.003G109100.1.v4.1 annot-version=v4.1
ATGTTAGATCTAGGTCCATTCTCAGACGATAAATTCGACCCGAAAAAATGGATAAACTCCGCTTGCAAGACCCGGCACCAACAAGAATCACTCGACAAAC
ACTTGGTGGATCTCGAAATGAAACTCCAGATGGTATCCGAAGAGATCGCTGCCTCTCTCGAGGAACAGAGCGCTGCCGCTCTCCTCCGTGTCCCTCGCGC
CACTCGCGATGTCGTTCGTCTGCGTGACGACGCCGTTTCTCTTCGCACTTCTGTCTCTTCCATCCTCCAAAAGCTCAAAAAGGCAGAGGGAACATCGGCG
GAATCTATAGCGGCACTTGCGAAAGTTGATACTGTAAAGCAGAGAATGGAAGCTGCTTACGAGACCTTGCAGGATGCGGCGGGGTTAACTCAATTGAGTT
CCACAGTGGAGGATGTGTTTGCTAGCGGTGATCTTCCTCGTGCAGCGGAAACATTGGCTAATATGAGGCATTGCTTATCTGCTGTTGGCGAGGTCGCTGA
ATTTGCTAATGTGAGGAAGCAACTCGAGGTTTTAGAGGATAGGTTAGATTCAATGGTACAGCCTCGCTTAATGGATGCACTATCTAATCGCAAGGTTGAT
ATTGCTCAAGATTTGAGGGGAATACTGATGCGAATTGGGAGATTTAAGTCTCTAGAGATGCATTATACCAAAGTTCATCTAAAGCCTTTAAGACAGCTAT
GGGAAGATTTTGAAACTAGGCAACGTGCTAATAAGCTTGCAAGTGAGAGAAATGAGATGGATAGGCTATCAGGCAGCAATGATTCACCGGCAATTTCATT
TGCAAGTTGGTTGCCGAGTTTCTATGATGAATTGCTGCTCTATCTTGAGCAAGAATGGAAGTGGTGTACAATTGCTTTTCCTGAGGACTATAGAACTCTT
GTGCCGAAGCTACTAATTGAGACAATGGCAGCTCTGGGGGCAAGTTTTATTTCCCGTATCAATCTTGCCACTGGAGATGTTGTCCCTGAGACAAAAACAC
TTGCCAAAGGTATATTGGATATTTTATCTGGAGATATGCCCAAGGGCATCAAGATCCAGGCTAAGCATCTTGAGGCTTTGATTGAATTGCACAACATGAC
AGCCACCTTTGCAAGGAATGTTCAGCACTTATTTTCAGAATCTGATCTCCGAGTTTTAATGGATACGCTGAAGGCAGTCTACCTTCCTTATGAATCTTTT
AAACAGAGGTATGGACAGATGGAGCGTGCCATCCTCTCTTCTGAGATTGCAGGGGCTGATCTAAGGGGAGCTGTTACTCGTGGTGTGGGAGCCCAGGGCA
TCGAATTGAGTGAAACAGTTCGGAGAATGGAAGAGTCTACTCCCCATGTCATTGTTCTTCTTGAAGCAGCTGTAGAAAGGTGCATCAGCTTTACTGGTGG
TTCCGAAGCAGATGAACTAGTTCTTGCACTTGATGATATAATGTTACAGTACATTTCTTTGCTTCAAGAAACGCTCAAATCCTTAAGAGCTGTGAGTGGA
GTAGATAACATAGGTGATCCAAAGAAAGACACAAGTTTGGAGAAAAAAGAAGGGAGTCAAAATGCACGCAAAGTTGACATGGTCTCGAATGAAGAGGAAT
GGTCCATTGTTCAAGGGGCCTTACAGATACTCACAGTTGCAGATTGTCTAACAAGCAGGTCTTCTGTCTTTGAAGCTTCCTTGAGATCCACTCTAGCTAG
AATAAGCACAAGTTTGTCTTTTTCGGTATTTGGATCAAGTTTGGACCAAAAACAGTCTCACATGACCATTATTGATGGAAATGGTGAACCATCCTTGGGA
CAAAGAGCTGCCTTGGATGTGGCAGTTGTACGACTTGTTGATGCTCCTGAGAAGGCTCGGAAACTATTTAACCTTTTAGATCAGTCCAAAGATCCCCGCT
TTCATGCACTTCCACTTGCATCGCAGAGAGTTTCAGCATTTGCTGATGCAGTGAATGAACTTGTTTATGATGTCCTCATATCTAAAGTACGACAGCGCCT
CAGTGATGTATCTCGTTTGCCAATTTGGTCCGCAGTTGATGAACATAGTTCTTTCCGTCTCCCAACCTTCAGTGCATACCCTCAGTCATATGTAACCAGT
GTTGGCGAATATCTCCTTACCTTACCCCAGCAGTTGGAGCCACTTGCTGATGGCATATCTAATAATGATGCCAACAATGAAGAAGCACAGTTTTTTGCAA
CTGAATGGATGTTCAAGGTTGCGGAAGGTGCCACTGCTCTTTACATGGAGCAGCTGCGGGGTATTCAGTATATAACAGATCGTGGCGCACAACAACTATC
TGTCGATATTGAATACCTGAGTAATGTACTTTCTGCTTTATCGATGCCAATTCCTCCAATCCTTGCAACATTCCACACTTGCCTCTCGACCCCAAGAGAC
CAGCTGAAGCAACTTGTGAAATCAGATTCAGGGAACCAGCTAGATCTTTCAACGGCAAATCTCGTGTGTAAAATCCGCCGTGTCAGTTTAGATTAG
AA sequence
>Potri.003G109100.1 pacid=42786581 polypeptide=Potri.003G109101.1.p locus=Potri.003G109100 ID=Potri.003G109100.1.v4.1 annot-version=v4.1
MLDLGPFSDDKFDPKKWINSACKTRHQQESLDKHLVDLEMKLQMVSEEIAASLEEQSAAALLRVPRATRDVVRLRDDAVSLRTSVSSILQKLKKAEGTSA
ESIAALAKVDTVKQRMEAAYETLQDAAGLTQLSSTVEDVFASGDLPRAAETLANMRHCLSAVGEVAEFANVRKQLEVLEDRLDSMVQPRLMDALSNRKVD
IAQDLRGILMRIGRFKSLEMHYTKVHLKPLRQLWEDFETRQRANKLASERNEMDRLSGSNDSPAISFASWLPSFYDELLLYLEQEWKWCTIAFPEDYRTL
VPKLLIETMAALGASFISRINLATGDVVPETKTLAKGILDILSGDMPKGIKIQAKHLEALIELHNMTATFARNVQHLFSESDLRVLMDTLKAVYLPYESF
KQRYGQMERAILSSEIAGADLRGAVTRGVGAQGIELSETVRRMEESTPHVIVLLEAAVERCISFTGGSEADELVLALDDIMLQYISLLQETLKSLRAVSG
VDNIGDPKKDTSLEKKEGSQNARKVDMVSNEEEWSIVQGALQILTVADCLTSRSSVFEASLRSTLARISTSLSFSVFGSSLDQKQSHMTIIDGNGEPSLG
QRAALDVAVVRLVDAPEKARKLFNLLDQSKDPRFHALPLASQRVSAFADAVNELVYDVLISKVRQRLSDVSRLPIWSAVDEHSSFRLPTFSAYPQSYVTS
VGEYLLTLPQQLEPLADGISNNDANNEEAQFFATEWMFKVAEGATALYMEQLRGIQYITDRGAQQLSVDIEYLSNVLSALSMPIPPILATFHTCLSTPRD
QLKQLVKSDSGNQLDLSTANLVCKIRRVSLD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G51430 EYE EMBRYO YELLOW, conserved oligo... Potri.003G109100
[exp]
0 1
AT1G01510 AN ANGUSTIFOLIA, NAD(P)-binding R... Potri.014G089400
[exp]
4.47 0.9063
AT4G34450 coatomer gamma-2 subunit, puta... Potri.004G153500
[exp]
9.16 0.9220
AT5G10840 Endomembrane protein 70 protei... Potri.006G264500
[exp]
10.67 0.9226
AT5G46290 KAS1, KAS I, KA... KETOACYL-ACP SYNTHASE 1, 3-ket... Potri.011G079700
[exp]
17.32 0.8825 Pt-I.1
AT5G33320 ARAPPT, CUE1 PHOSPHOENOLPYRUVATE/PHOSPHATE ... Potri.015G077900
[exp]
17.60 0.8936
AT3G63460 EMB2221 transducin family protein / WD... Potri.009G055400
[exp]
21.72 0.8418
AT4G30260 Integral membrane Yip1 family ... Potri.006G169200
[exp]
22.62 0.8855
AT1G20010 TUB5 tubulin beta-5 chain (.1) Potri.005G239900
[exp]
23.81 0.8795
AT5G11980 conserved oligomeric Golgi com... Potri.006G225500
[exp]
24.28 0.9060
AT5G60020 LAC17, ATLAC17 laccase 17 (.1) Potri.006G087500
[exp]
25.21 0.9009 LAC110c

Potri.003G109100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.