Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47420 696 / 0 AtG3Pp1, ATPS3 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) AT1G30560 572 / 0 AtG3Pp3 glycerol-3-phosphate permease 3, Major facilitator superfamily protein (.1) AT4G25220 557 / 0 AtG3Pp2, RHS15 glycerol-3-phosphate permease 2, root hair specific 15 (.1) AT4G17550 514 / 7e-179 AtG3Pp4 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1) AT2G13100 498 / 2e-173 AtG3Pp5 glycerol-3-phosphate permease 5, Major facilitator superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G124200 [exp] 880 / 0 AT3G47420 711 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Potri.001G152300 [exp] 548 / 0 AT4G17550 692 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1) Potri.018G115000 [exp] 494 / 2e-171 AT2G13100 699 / 0.0 glycerol-3-phosphate permease 5, Major facilitator superfamily protein (.1.2.3) Potri.003G082366 [exp] 484 / 2e-167 AT4G17550 624 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031153 [exp] 664 / 0 AT3G47420 695 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Lus10027210 [exp] 651 / 0 AT3G47420 705 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Lus10038923 [exp] 566 / 0 AT3G47420 586 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Lus10004358 [exp] 555 / 0 AT4G17550 725 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1) Lus10040154 [exp] 555 / 0 AT4G17550 734 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1) Lus10040002 [exp] 472 / 8e-163 AT2G13100 708 / 0.0 glycerol-3-phosphate permease 5, Major facilitator superfamily protein (.1.2.3) Lus10027211 [exp] 431 / 2e-149 AT3G47420 454 / 9e-159 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Lus10031729 [exp] 139 / 2e-39 AT3G47420 155 / 2e-46 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00083 [poplar] [flax] Sugar_tr Sugar (and other) transporter CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.003G109300.2 pacid=42785804 polypeptide=Potri.003G109300.2.p locus=Potri.003G109300 ID=Potri.003G109300.2.v4.1 annot-version=v4.1 ATGAGTCCATCTCTGGATCCAGTCGAAAGAAACCAAATTAAGCCCCCTATTGGTATTCGATTCTTAGAATGCGTAAAGAAGAGAAGGCTTTCCTACGGAA CCCACCAAGCCATTGTCTTGATCGTTACATTTTTGGCATACGCGAGCTACCATGCTGCTCGAAAAACCACGAGCATTGTCAAGAGCACCCTTGACCCACA ATCATCTGAGGTGGGGTTAAGGTCTGTCCCATGGAGGATTACTTACTCAAATGAACCAGTTGCAAGAAAAAGATCTTCATGGAAACTTGGAGAAGGTTGG GCTCCATTTGATGCCTCAGACGGAACAGCCTTGCTTGGTGAACTAGACTTGGCTTTCCTTGCTATATATGCCATAGGAATGTTCTTTTCAGGGCACCTAG GTGATAGGATGAATTTAAGGATCTTTTTGACAATAGGAATGGTCGGAACTGGTATATTTACGTCATTATTTGGCGTTGGATTTTGGGAAAATGTGCACAA TTTTTACTACTACTTGATAGTGCAAATGCTTGCTGGCCTGTTCCAATCAACTGGATGGCCTTCGGTGGTTGCGGTGGTTGGTAAGTGGTTTGGGAAGAGG AAGAGAGGGCTAATTATGGGTATATGGAATGCCCACACTTCTGTTGGGAATATTTCAGGCTCTTTGATTGCTGCTGCAATGTTGAGCTATGGGTGGGGCT GGTCTTTTGTTTTGCCTGGTCTCGTTATTGCTTTTGTTGGCTTGCTTGTGTTTTTGTTACTGCCTGTTAGTCCCGAAGCTGTTGGAGCTGATAAAGATGA AGATGAATTGGATTCTCCAAATAAAGCTGGGGAGGGAGTTACAGAGCCTCTTTTGGCTTCGGACCCTGATGTTAAACAGGAAGCTGTGGGGTTCATTGAA GCATGGAAAATACCTGGAGTTGCTCCATTTGCTCTTTGCCTATTTTTCTCCAAACTGGTGGCCTATACTTTTCTCTACTGGCTTCCTTTCTACATTAGCC AGACAGCCATTGACGGAAAGTACTTATCCGATGGAAGTTCTGGAAACTTGTCAACTCTTTTTGATGTTGGAGGGGTGGTTGGGGGAATTTTAGCTGGTCA CATTTCTGATCGCCTAGATGCCAGAGCAATTACAGCAGCAAGCTTCATGTACTGTGCCATCCCTTCTCTCTTTTTCTACCGGAGCTATGGACACCTTTCC TTGGGTTTAAACATTGCTCTTATGTTCATTACTGGCATGTTTGTGAACGGCCCTTATGCTCTTATAACAACAGCTGTCTCGGCTGACTTGGGAACTCACA GTTCCTTGAAGGGGAACTCAAGGGCATTGGCCACTGTTACGGCAATCATAGATGGAACAGGCTCGGTTGGAGCTGCAATTGGACCTTTATTAACAGGTTA CATTTCTTCTAAGAGCTGGAATGCAGTTTTCGCAATGTTAATGGCTGCAGCTTTAGTTGCAGGTTTGCTATTGACGAGACTTATTGTGGCTGAAGTGGCT GCAAAGATTGCTGAATCAAGGTCTCAAGGATCTACGTCAAGAGCACCAGCTGCTGCACTTGATGTGTGA
AA sequence Show only first row Show all	>Potri.003G109300.2 pacid=42785804 polypeptide=Potri.003G109300.2.p locus=Potri.003G109300 ID=Potri.003G109300.2.v4.1 annot-version=v4.1 MSPSLDPVERNQIKPPIGIRFLECVKKRRLSYGTHQAIVLIVTFLAYASYHAARKTTSIVKSTLDPQSSEVGLRSVPWRITYSNEPVARKRSSWKLGEGW APFDASDGTALLGELDLAFLAIYAIGMFFSGHLGDRMNLRIFLTIGMVGTGIFTSLFGVGFWENVHNFYYYLIVQMLAGLFQSTGWPSVVAVVGKWFGKR KRGLIMGIWNAHTSVGNISGSLIAAAMLSYGWGWSFVLPGLVIAFVGLLVFLLLPVSPEAVGADKDEDELDSPNKAGEGVTEPLLASDPDVKQEAVGFIE AWKIPGVAPFALCLFFSKLVAYTFLYWLPFYISQTAIDGKYLSDGSSGNLSTLFDVGGVVGGILAGHISDRLDARAITAASFMYCAIPSLFFYRSYGHLS LGLNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISSKSWNAVFAMLMAAALVAGLLLTRLIVAEVA AKIAESRSQGSTSRAPAAALDV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Potri.003G109300 [exp]	0	1
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Potri.010G043700 [exp]	5.38	0.7720
AT1G79840	HD	GL2	GLABRA 2, HD-ZIP IV family of ...		Potri.003G052400 [exp]	13.11	0.7616	GL2.1
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Potri.001G263400 [exp]	34.29	0.7021
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Potri.012G041900 [exp]	34.46	0.7369	NANN.1
AT3G14470			NB-ARC domain-containing disea...		Potri.017G121700 [exp]	37.14	0.7089
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Potri.014G041300 [exp]	40.43	0.7179
AT2G47710			Adenine nucleotide alpha hydro...		Potri.002G193800 [exp]	43.24	0.7280
AT2G26230			uricase / urate oxidase / nodu...		Potri.010G242600 [exp]	46.91	0.6993	Pt-ASUR5.1
AT1G22640	MYB	AtMYB3	ARABIDOPSIS THALIANA MYB DOMA...		Potri.019G081500 [exp]	48.12	0.7232	MYB6.2,MYB168
AT1G53900			Eukaryotic translation initiat...		Potri.001G163300 [exp]	50.64	0.7023

Compare expression of checked genes

Potri.003G109300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.