Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45332 1330 / 0 Translation elongation factor EFG/EF2 protein (.1) AT2G45030 1322 / 0 Translation elongation factor EFG/EF2 protein (.1) AT1G62750 571 / 0 ATSCO1, ATSCO1/CPEF-G SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1) AT3G12915 124 / 6e-29 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT1G06220 116 / 1e-26 GFA1, CLO, MEE5 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT5G39900 110 / 8e-25 Small GTP-binding protein (.1) AT5G25230 109 / 2e-24 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT5G13650 107 / 5e-24 SVR3 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) AT5G08650 104 / 4e-23 Small GTP-binding protein (.1) AT2G31060 102 / 3e-22 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G123600 [exp] 1492 / 0 AT1G45332 1337 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Potri.003G113500 [exp] 580 / 0 AT1G62750 1310 / 0.0 SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1) Potri.018G114900 [exp] 115 / 4e-26 AT1G06220 1710 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.017G079800 [exp] 108 / 2e-24 AT5G39900 999 / 0.0 Small GTP-binding protein (.1) Potri.006G053000 [exp] 105 / 2e-23 AT5G13650 1123 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Potri.001G305300 [exp] 102 / 2e-22 AT5G08650 1063 / 0.0 Small GTP-binding protein (.1) Potri.013G123700 [exp] 102 / 3e-22 AT2G31060 1084 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Potri.005G098100 [exp] 92 / 5e-19 AT1G56070 1648 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065700 [exp] 88 / 9e-18 AT1G56070 1623 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018604 [exp] 1347 / 0 AT2G45030 1343 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Lus10039840 [exp] 1283 / 0 AT2G45030 1289 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Lus10004326 [exp] 570 / 0 AT1G62750 1332 / 0.0 SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1) Lus10028909 [exp] 569 / 0 AT1G62750 1334 / 0.0 SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1) Lus10031201 [exp] 120 / 9e-28 AT1G56070 1415 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10007535 [exp] 102 / 3e-22 AT5G13650 1121 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10039896 [exp] 101 / 5e-22 AT2G31060 976 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Lus10002179 [exp] 101 / 7e-22 AT2G31060 1036 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Lus10035968 [exp] 100 / 9e-22 AT5G08650 1102 / 0.0 Small GTP-binding protein (.1) Lus10007250 [exp] 100 / 2e-21 AT5G39900 1080 / 0.0 Small GTP-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00009 [poplar] [flax] GTP_EFTU Elongation factor Tu GTP binding domain CL0437 [poplar] [flax] EF-G_C PF00679 [poplar] [flax] EFG_C Elongation factor G C-terminus CL0575 [poplar] [flax] EFTPs PF03144 [poplar] [flax] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0329 [poplar] [flax] S5 PF03764 [poplar] [flax] EFG_IV Elongation factor G, domain IV CL0437 [poplar] [flax] EF-G_C PF14492 [poplar] [flax] EFG_III Elongation Factor G, domain III
Representative CDS sequence Show only first row Show all	>Potri.003G109900.1 pacid=42784750 polypeptide=Potri.003G109900.1.p locus=Potri.003G109900 ID=Potri.003G109900.1.v4.1 annot-version=v4.1 ATGACCCGATTCCAAAATGGATCACGCCTCCTCTCCTACACCTTCTTCCGCTCCAAAAAGACACCGTCAACTTCCCCAAACGCCGCTCTCCTCCAGGGCA ACTTCCAAATCCAGCAACACCGCCACTTCTCCAACCTTGCACGCGTCACCACTAAAGAAGAAAAGGAGCCACGGTGGAAGGACTCGATGGACAGACTAAG AAACATTGGTATCTCAGCTCATATCGACTCCGGTAAAACCACTCTTACTGAACGCATACTCTATTACACTGGTCGAATTCACGAGATTCATGAGGTTCGC GGTCGTGATGGAGTTGGGGCTAAGATGGATTCCATGGACTTGGAGAGAGAGAAGGGGATCACTATCCAGTCTGCTGCTACTTACTGCACGTGGAATGGAT ATCAGGTGAATATAATTGATACGCCAGGACATGTGGATTTTACAATAGAGGTGGAGAGGGCTCTGAGAGTGTTGGATGGTGCAATTCTGGTTTTGTGTAG CGTGGGTGGAGTGCAAAGTCAGTCTATTACTGTGGATAGGCAAATGAGGAGATATGAGGTGCCTAGGCTTGCTTTTATTAATAAACTTGATCGAATGGGA GCTGATCCCTGGAAAGTTTTAAACCAGGCAAGGTCTAAACTAAGACATCATAGTGCAGCAGTGCAAGTTCCAATTGGGCTGGAAGATGATTTGCAAGGCC TTATTGATCTTGTAAAGATGAAAGCATATTATTTCCATGGCTCAAATGGTGAAAAAGTTGTCACTGCAGAAATACCAGCTGAGATGGAGGCCTTAGCTGC AGAAAAACGGCGTGAACTAGTAGAAACAGTTTCTGAAGTTGATGATAAACTTGCAGATGCTTTTCTCACAGATGAGCCTATTTCATCCTCTGACCTTGAG GAGGCAATTCGCAGGGCTACTGTAGCGAAGAAATTTGTACCTGTATTCATGGGCAGTGCATTCAAGAACAAGGGAGTACAGCCACTTCTAGATGGTGTAC TTAGTTATTTGCCTTGTCCCACTGAAGTTGGTAACTATGCTCTTGACCAAACCAAGGATGAAGAGAAGGTTGTGTTGTCTGGAACTCCAGATGGACCACT TGTGGCATTGGCTTTTAAATTAGAAGAAGGTCGTTTTGGTCAGTTGACATATCTAAGAATCTACGAGGGTGTAATTCGCAAGGGTGATTTTATAATTAAT GTAAACACAGGCAAGAAGATCAAGATTCCTCGTTTGGTTCGGATGCACTCTGATGAAATGGAGGACATTCAAGAGGCACATGCGGGGCAAATAGTTGCTG TGTTCGGTGTGGATTGTGCTTCAGGAGACACTTTTACTGATGGATCAGTTAAATACACTATGACCTCTATGAATGTCCCTGAGCCAGTTATGTCATTGGC CATTCAACCAATCTCAAAAGACTCTGGAGGACAATTTTCAAAAGCTTTGAATCGTTTTCAGAAAGAGGATCCCACTTTCCGTGTTGGCTTGGATCCTGAG AGTGGGCAGACCATAATTTCTGGAATGGGAGAGTTGCATTTGGACATATATGTGGAACGGATTAGGAGAGAGTACAAGGTAGATGCAAGTGTTGGGAAGC CTCGTGTGAACTTCAGAGAAACAATCACTCAGCGTGCTGAATTTGATTATTTACATAAGAAGCAAACTGGAGGACAAGGACAATATGGACGGGTATGCGG GTACATTGAGCCGCTTCCACAGGGGTCAACAACTAAGTTTGAGTTTGATAACATGATTGTAGGACAGGTTATACCATCAAACTTCATTCCTTCTATTGAG AAGGGATTCAAGGAAGCTGCCAATTCGGGTTCTTTAATTGGGCATCCAGTAGAAAATCTTCGAATTGCTTTGACAGATGGCGCTGCCCATGCTGTGGATT CTAGTGAACTTGCATTTAAATTAGCATCAATATATGCTTTTAGACAGTGTTACGCAGCTGCAAAACCTGTGATACTGGAACCTGTAATGCTGGTGGAACT GAAAGTACCAACAGAGTTTCAGGGAACCGTAGCGGGTGACATTAACAAGAGGAAAGGAGTGATTGTTGGAAATGACCAGGATGGGGATGACTCTATAATA ACCGTCCATGTGCCTTTGAACAATATGTTTGGTTACTCAACTTCTCTTCGTTCAATGACACAGGGAAAGGGTGAATTCACAATGGAATACAAAGAACATT CACCTGTTTCTCAGGATGTGCAAATGCAATTAGTCAACACCTACATGGCCAGCAAGGGTGCTGAATAA
AA sequence Show only first row Show all	>Potri.003G109900.1 pacid=42784750 polypeptide=Potri.003G109900.1.p locus=Potri.003G109900 ID=Potri.003G109900.1.v4.1 annot-version=v4.1 MTRFQNGSRLLSYTFFRSKKTPSTSPNAALLQGNFQIQQHRHFSNLARVTTKEEKEPRWKDSMDRLRNIGISAHIDSGKTTLTERILYYTGRIHEIHEVR GRDGVGAKMDSMDLEREKGITIQSAATYCTWNGYQVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG ADPWKVLNQARSKLRHHSAAVQVPIGLEDDLQGLIDLVKMKAYYFHGSNGEKVVTAEIPAEMEALAAEKRRELVETVSEVDDKLADAFLTDEPISSSDLE EAIRRATVAKKFVPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVGNYALDQTKDEEKVVLSGTPDGPLVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIIN VNTGKKIKIPRLVRMHSDEMEDIQEAHAGQIVAVFGVDCASGDTFTDGSVKYTMTSMNVPEPVMSLAIQPISKDSGGQFSKALNRFQKEDPTFRVGLDPE SGQTIISGMGELHLDIYVERIRREYKVDASVGKPRVNFRETITQRAEFDYLHKKQTGGQGQYGRVCGYIEPLPQGSTTKFEFDNMIVGQVIPSNFIPSIE KGFKEAANSGSLIGHPVENLRIALTDGAAHAVDSSELAFKLASIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGTVAGDINKRKGVIVGNDQDGDDSII TVHVPLNNMFGYSTSLRSMTQGKGEFTMEYKEHSPVSQDVQMQLVNTYMASKGAE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G45332			Translation elongation factor ...		Potri.003G109900 [exp]	0	1
AT4G01860			Transducin family protein / WD...		Potri.002G189400 [exp]	1.41	0.8776
AT1G67120			ATPases;nucleotide binding;ATP...		Potri.017G039100 [exp]	6.32	0.8666
AT3G20730			Tetratricopeptide repeat (TPR)...		Potri.007G068900 [exp]	8.36	0.8447
AT5G06350			ARM repeat superfamily protein...		Potri.001G208900 [exp]	8.48	0.8436
AT3G04820			Pseudouridine synthase family ...		Potri.005G051400 [exp]	9.16	0.8347
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Potri.010G170400 [exp]	12.00	0.8456
AT2G17510		EMB2763	EMBRYO DEFECTIVE 2763, ribonuc...		Potri.007G059100 [exp]	14.86	0.8292
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Potri.005G107600 [exp]	14.89	0.8535	Pt-RPB1.1
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Potri.011G094100 [exp]	15.65	0.8428
AT4G38760			Protein of unknown function (D...		Potri.009G130000 [exp]	17.23	0.8364

Compare expression of checked genes

Potri.003G109900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.