Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35050 672 / 0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G79570 629 / 0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G16270 621 / 0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) AT3G24715 500 / 1e-155 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G04700 497 / 2e-155 PB1 domain-containing protein tyrosine kinase (.1) AT5G57610 457 / 2e-140 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G46920 455 / 1e-138 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G67890 206 / 5e-55 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT5G49470 199 / 8e-55 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT1G73660 201 / 2e-52 protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G123500 [exp] 1446 / 0 AT2G35050 660 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.005G095200 [exp] 691 / 0 AT1G79570 641 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.007G069500 [exp] 669 / 0 AT1G16270 994 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) Potri.003G176100 [exp] 494 / 2e-153 AT1G04700 725 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.001G052000 [exp] 492 / 9e-153 AT1G04700 721 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.006G170700 [exp] 471 / 5e-145 AT5G57610 1087 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.006G190200 [exp] 469 / 2e-141 AT3G46920 652 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G095800 [exp] 459 / 2e-140 AT5G57610 1075 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G114300 [exp] 460 / 6e-138 AT3G46920 646 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031749 [exp] 638 / 0 AT1G16270 703 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) Lus10031173 [exp] 634 / 0 AT1G79570 963 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10038160 [exp] 504 / 2e-167 AT3G24715 527 / 2e-179 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10001315 [exp] 469 / 8e-150 AT5G57610 657 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10006977 [exp] 469 / 1e-144 AT5G57610 1048 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10040006 [exp] 468 / 4e-142 AT3G46920 604 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10019577 [exp] 470 / 1e-141 AT3G46920 606 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10025941 [exp] 408 / 2e-121 AT3G24715 424 / 2e-129 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10031750 [exp] 335 / 1e-103 AT1G79570 334 / 1e-104 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10016912 [exp] 195 / 2e-51 AT1G67890 848 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00564 [poplar] [flax] PB1 PB1 domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.003G110000.2 pacid=42785915 polypeptide=Potri.003G110000.2.p locus=Potri.003G110000 ID=Potri.003G110000.2.v4.1 annot-version=v4.1 ATGGACAGGAATCTGGGAAAAAGCATGGTAGATCAACAGAAAAACTATGAACAAATTCAATCCAATAACATGGAAGCTAGAAATGAAGGGAAGGGGTCTG TAAACCAAAGATTTTTCCATGATCCATCAGCTAATATTAATACTAACATGCGACCTCCTGACTACAACATGTCAATGGGAGCTAGGCCTGTGCTAAATTA CTCCATTCAGACTGGTGAGGAATTCGCTCTTGAATTTATGCGGGAGAGGGTGAACCCCAGGCAACAGTTCTTTCCAAGTGCTCGCATTGATCCTAATAGT TCAACTGGCTATGTTGGACTGGAGGGTGTGTTGGGAATATCCCATATGGGTTCTGAAAGTGGGGCTGACATCTCTATGATTAGCTCGGTTGAAAAAGCTC GGAACCAGGAGTCTGACAGGAAGGGGTCCTCTGTTAATGAAGATCAAAGTTATTATGACCCTGTCCCATCAGTACCGCGAACCTCACCGAGAAATGACAG CAGTCGAGGAATTCATGGTTATCCATCTTCAGGAGCTTCTGATAGTTCATCAACAAAGTTGAAGTTTCTCTGCAGCTTTGGTGGTACAATTTTGCCTCGT CCGAGTGATGGAAAGCTGAGATATGTTGGGGGCGAAACGCGCATTATCCGAATAAGCAAAAATATTTCTTGGCAGGAGCTTATGCAGAAAACAGTGGCAA TTTACAATCAATCTCACACTATAAAATATCAGCTTCCTGGTGAAGATCTGGATGCGTTGGTTTCTGTATCCTGTGATGAGGATCTTCAGAACATGATGGA AGAATGCAATGTATCAGAAGATGGGGGGTCAAAGAAGCCTAGGATGTTCCTTTTTTCTTGCAATGATCTAGAGGACTCCCAGTTTGGCCTAGGAAGTGGA GAGGGTGAGAATTCTGAGATTCAATATGTAGTTGCTGTAAATGGTATGGACTTGGGTTCAAGGAAGAACTCAATGAATCTGGCAAGTGCATCTGGGAACA ATTTGGATGAGTTGCTCTGTCTTAATGTTGAGAGGGAAAGCGGTCGAGTTGCAGCTGAATTCACTGGCAGTAATGTCCCGTCTTCAGCTGTTAATATGCT GCCATCAACAATTCAATCTTCTCAACCAGTGCCGATGATTTCATCTAGTGCCCAAGAATCTAATTCACAACCTTACCATGGCCAGAAAATGCACCGTGGA GATAATAGCCAGCGCCCAGCATCATCCATGCAACCTATTGAGAGCTTCTCCCATGTGGATAGAAAGGGCATCAATCCATTGCCGGTCCCAATTCAATTTG GTTTTGATTCTCATCTTCCTGACCATGCAACAGTTGGGGAAAATTTAGTGGGAGTGCCTTTCCATGTGTATCCTCCAACACAACAGGGGGTTTTGGGAGA AGAGAAACTGTATAGTGGCATTCATGTGCAAAATGCAGAAGTGTCTGTAAAGGATACAAAACTCAAAAGAGATAGCTCAGGAAAGAAAATAAATGAACCT GAGAAAGTTAAAACTATGGATAAGGAGGCAGCTAAAAAGGAATTCAAAATGAAGCGGGATGATTCATTCCAGAAGCTTAATGAAACTTTTAAAATTCGGG CAGTGGAAAATGATACTGTTTCCTTGCATCCACATGATAGTTCTGCTCCAAATTACACTTCTAGAGAAGAAGTATCGGTTGCCAATTCAATGCAAGAAGT AGGATCACCACTGCAGCTCATGAAAACTAATAAAGGGCCCCAAGAAGCTGTACTCAGTTCGATGCCCACTGAAGCTGTGACTGAAGGGATAAAAAATAAC AGGGATGACCATTTCCATTCATCTGGTGATCCATTTGCCCCAGGATATGGGGGTTCTGAGGCTGATCCAACAGATTTTAGCTATCCTGAACCATCTGTGG TTTCTCATCGGGTTTTTCATTCTGAGCGAATTCCCAGGGAGCAGGCAGAATTAAATCGCTTGTCAAAATCTGATGATTCTTTTGATCCTCAGATTCTAAT AACTCAAGCACGTTCTGGTTCTCAACCAGTTATAGAATCGATTGATAAGTTGCATGAAGGAAATGTGGCTTCCCAGACTGACCAGCCCCGCACATCTGCA AGATCGCGTTATGCAAATCCCCAGACTGTTGAAGATGGACTCGCACAGTTTGAAAAGTATAAAGAATTTGCTGATAACATCAGTAAAGTAAATCCCAATA TTGCTCAAGGTCTAGGGTCAAACGTGCAGAAATCTGAATTGAGACGTGTTGTTTTTAATCCAGTGGATGATTATGAAGGTTCCCAGGTTAAAGGTAACTA CACTGATCGCTCTATCAATGATAACAAAGCAGTTGGGTTGACACATTCCACAGCAAGTCAGGGAACTTCTAGTAAGCACCCAGAAGATCCTGCTTTGGGG CCTCAAGAGTTTGAAAGAACTGATATTGGTGCTGACAATAACAATGGGAACAACACTAAGGTGAGTGTGCAGCCTCTGGCATGGACAGAGAGCCCAGTTA GAGCTGTTTCTCAAGGGGAGCCCAGCTTTGGTGTTGGCACTCCTGAGCAGAAAGACATACGAATCGATATAAATGACCGGTTTCCTCCTGATTTCCTGTC TGATATTTTCTCCAAAGCGAAAATCCATGAGACTGGTTTGGGGCCTCAAGAGTTTGAAAGAACTGATTTTGGTGCTGACAATAACAATGGGAACAACACC AAGGTGAGTGTGCAGCCTCTGGCATGGACAGGAAGCCCAGTTAGAGCTGTTTCTCAAGGGGAGCCCAGCATTGGTGTTGGCGCTCCTGAGCAGAAAGACA TATGTATTGATATAAATGACCGGTTTCCTCATGATTTCCTGTCTGATAGTTTCTCAAAAGCGAAAACCCATGAGACTGGGGTCAGTCCAGTGCATGTTGA TGGAGTGGGCTTGAGCTTGAACATGGAGAATCATGACCCAAAACGCCGGTCTTACTTTCAGAATTTGGCTCAAGATCAGTCTGCCAGCAAAGTTTTTTCC CTTATAGACCAAGACCATCTGAGTTATTCATCCTCGCTTACAAATGTTGAAGGAGGGGCTCCCATAGATTATAGTTATCCACCCTTAAAGTCTGATGGAG TTGGCTTGCCTCACATTGAGGAAGATGTTCGGCAAGAGACATCTGGTGTTGTTGGACCGAACACCATGGATTCCCATGCAGATTATGGTCATTTTGAGCT GAAAGGCATTGAGAGTGCGTGGTTGGATGGGATGAATGCTAGAATACCTGAATCAGAGTATGAGGGTGGCAAGTTGGACATTCGAAACATTGGCACACAT CTTGTCGATCTTTCTCTAGGAGAGTTTGATATTAGCACCTTGCAGATCATAAAAAATGAGGACCTGGAAGAGCTGAGAGAATTGGGGTCTGGCACATTTG GTACTGTTTATCATGGAAAATGGAGGGGTACAGATGTTGCCATTAAGCGAATAAAAAAGAGCTGCTTCACCGGCCGCACATCAGAACAAGAAAGATTGAC CACGGAGTTCTGGCGTGAAGCTGAAATTCTCTCAAAGCTTCACCACCCCAATGTTGTTGCATTTTATGGAGTGGTGCAGGATGGACCAGGAGGAACACTA GCCACTGTGACAGAGTTCATGGTGAATGGCTCTCTTAGACATGTTTTACTTAGCAAGGACAGGCATCTTGATCATCGTAAGCGTCTGATTATTGCGATGG ATGCAGCTTTTGGAATGGAATATTTGCATTCAAAGAACATTGTGCATTTTGATTTGAAATGTGACAACTTGCTTGTCAACCTGAAGGATCCTTTACGACC TATTTGCAAGGTAGGTGATTTTGGTTTGTCAAAGATCAAAAGGAATACCTTGGTTACTGGTGGTGTAAGGGGAACTCTTCCATGGATGGCTCCAGAACTC CTGAATGGTAGCAGCAGTAAGGTTTCTGAAAAGGTTGATGTGTTCTCTTTCGCCATTGTCTTATGGGAGATTCTCACTGGTGAAGAGCCTTATGCCAATA TGCATTATGGTGCAATCATAGGAGGCATAGTTAATAACACCTTGAGACCGCCTGTACCAAGCTTTTGTGACCCGGAATGGAGATTGCTAATGGAGCAGTG TTGGGCACCTGATCCCATGGCCCGTCCATCATTCACAGAGATCGCCAGGCGCTTACGTGCCATGTCAGACGCATGTCGAACTAAACAGATACCCAAGTAG
AA sequence Show only first row Show all	>Potri.003G110000.2 pacid=42785915 polypeptide=Potri.003G110000.2.p locus=Potri.003G110000 ID=Potri.003G110000.2.v4.1 annot-version=v4.1 MDRNLGKSMVDQQKNYEQIQSNNMEARNEGKGSVNQRFFHDPSANINTNMRPPDYNMSMGARPVLNYSIQTGEEFALEFMRERVNPRQQFFPSARIDPNS STGYVGLEGVLGISHMGSESGADISMISSVEKARNQESDRKGSSVNEDQSYYDPVPSVPRTSPRNDSSRGIHGYPSSGASDSSSTKLKFLCSFGGTILPR PSDGKLRYVGGETRIIRISKNISWQELMQKTVAIYNQSHTIKYQLPGEDLDALVSVSCDEDLQNMMEECNVSEDGGSKKPRMFLFSCNDLEDSQFGLGSG EGENSEIQYVVAVNGMDLGSRKNSMNLASASGNNLDELLCLNVERESGRVAAEFTGSNVPSSAVNMLPSTIQSSQPVPMISSSAQESNSQPYHGQKMHRG DNSQRPASSMQPIESFSHVDRKGINPLPVPIQFGFDSHLPDHATVGENLVGVPFHVYPPTQQGVLGEEKLYSGIHVQNAEVSVKDTKLKRDSSGKKINEP EKVKTMDKEAAKKEFKMKRDDSFQKLNETFKIRAVENDTVSLHPHDSSAPNYTSREEVSVANSMQEVGSPLQLMKTNKGPQEAVLSSMPTEAVTEGIKNN RDDHFHSSGDPFAPGYGGSEADPTDFSYPEPSVVSHRVFHSERIPREQAELNRLSKSDDSFDPQILITQARSGSQPVIESIDKLHEGNVASQTDQPRTSA RSRYANPQTVEDGLAQFEKYKEFADNISKVNPNIAQGLGSNVQKSELRRVVFNPVDDYEGSQVKGNYTDRSINDNKAVGLTHSTASQGTSSKHPEDPALG PQEFERTDIGADNNNGNNTKVSVQPLAWTESPVRAVSQGEPSFGVGTPEQKDIRIDINDRFPPDFLSDIFSKAKIHETGLGPQEFERTDFGADNNNGNNT KVSVQPLAWTGSPVRAVSQGEPSIGVGAPEQKDICIDINDRFPHDFLSDSFSKAKTHETGVSPVHVDGVGLSLNMENHDPKRRSYFQNLAQDQSASKVFS LIDQDHLSYSSSLTNVEGGAPIDYSYPPLKSDGVGLPHIEEDVRQETSGVVGPNTMDSHADYGHFELKGIESAWLDGMNARIPESEYEGGKLDIRNIGTH LVDLSLGEFDISTLQIIKNEDLEELRELGSGTFGTVYHGKWRGTDVAIKRIKKSCFTGRTSEQERLTTEFWREAEILSKLHHPNVVAFYGVVQDGPGGTL ATVTEFMVNGSLRHVLLSKDRHLDHRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVTGGVRGTLPWMAPEL LNGSSSKVSEKVDVFSFAIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPPVPSFCDPEWRLLMEQCWAPDPMARPSFTEIARRLRAMSDACRTKQIPK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35050			Protein kinase superfamily pro...		Potri.003G110000 [exp]	0	1
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Potri.016G012900 [exp]	2.00	0.8422
AT5G27240			DNAJ heat shock N-terminal dom...		Potri.005G043200 [exp]	3.46	0.8418
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Potri.001G057800 [exp]	4.47	0.8382
AT1G08620		PKDM7D	Transcription factor jumonji (...		Potri.013G046700 [exp]	6.32	0.7845
AT2G25760			Protein kinase family protein ...		Potri.018G046400 [exp]	10.00	0.8415
AT4G34100			RING/U-box superfamily protein...		Potri.001G304100 [exp]	12.04	0.8558
AT1G63770			Peptidase M1 family protein (....		Potri.001G101975 [exp]	14.96	0.7936
AT4G02020		SDG10, SWINGER,...	SWINGER, SET DOMAIN-CONTAINING...		Potri.002G195700 [exp]	17.02	0.7346
AT5G04240	JUMONJI	ELF6	EARLY FLOWERING 6, Zinc finger...		Potri.010G224700 [exp]	19.13	0.7429
AT2G35510		SRO1	similar to RCD one 1 (.1)		Potri.002G112300 [exp]	21.49	0.8043

Compare expression of checked genes

Potri.003G110000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.