Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44800 1986 / 0 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT2G25170 551 / 2e-166 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT4G31900 496 / 1e-148 PKR2 PICKLE RELATED 2, chromatin remodeling factor, putative (.1.2) AT2G13370 442 / 1e-126 CHR5 chromatin remodeling 5 (.1) AT3G06400 367 / 4e-106 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT5G18620 363 / 8e-105 CHR17 chromatin remodeling factor17 (.1.2) AT5G19310 352 / 7e-101 Homeotic gene regulator (.1) AT3G06010 351 / 2e-100 ATCHR12 Homeotic gene regulator (.1) AT2G44980 329 / 4e-95 ASG3 ALTERED SEED GERMINATION 3, SNF2 domain-containing protein / helicase domain-containing protein (.1.2) AT5G66750 310 / 1e-89 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G123400 [exp] 3707 / 0 AT5G44800 1996 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.018G021100 [exp] 584 / 7e-177 AT2G25170 1818 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.006G262200 [exp] 571 / 3e-172 AT2G25170 1826 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.001G253400 [exp] 454 / 2e-130 AT2G13370 2206 / 0.0 chromatin remodeling 5 (.1) Potri.009G047800 [exp] 445 / 2e-127 AT2G13370 2129 / 0.0 chromatin remodeling 5 (.1) Potri.008G205600 [exp] 366 / 8e-106 AT3G06400 1724 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.010G021400 [exp] 362 / 2e-104 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.010G091200 [exp] 339 / 2e-96 AT3G06010 1408 / 0.0 Homeotic gene regulator (.1) Potri.008G149900 [exp] 337 / 1e-95 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038363 [exp] 2283 / 0 AT5G44800 1916 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Lus10036223 [exp] 2087 / 0 AT5G44800 1780 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Lus10005339 [exp] 580 / 5e-176 AT2G25170 1787 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10041019 [exp] 578 / 2e-175 AT2G25170 1776 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10022423 [exp] 459 / 6e-132 AT2G13370 2250 / 0.0 chromatin remodeling 5 (.1) Lus10009711 [exp] 446 / 9e-129 AT2G13370 2115 / 0.0 chromatin remodeling 5 (.1) Lus10034064 [exp] 355 / 8e-102 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1) Lus10010522 [exp] 354 / 1e-101 AT3G06010 1358 / 0.0 Homeotic gene regulator (.1) Lus10033967 [exp] 362 / 7e-101 AT5G18620 1650 / 0.0 chromatin remodeling factor17 (.1.2) Lus10041735 [exp] 322 / 4e-93 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0049 [poplar] [flax] Tudor PF00385 [poplar] [flax] Chromo Chromo (CHRromatin Organisation MOdifier) domain CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit CL0023 [poplar] [flax] PF06465 [poplar] [flax] DUF1087 Domain of Unknown Function (DUF1087)
Representative CDS sequence Show only first row Show all	>Potri.003G110100.12 pacid=42786409 polypeptide=Potri.003G110100.12.p locus=Potri.003G110100 ID=Potri.003G110100.12.v4.1 annot-version=v4.1 ATGAAGGATAACGGCTCAACAAGTAGCAAAATGATAAGCAGAAACTGGGTCTTGAAGCGAAAACGAAAAAAGATTCTATATGGACGAGTTGTTTCTACTA GTAAAGAAGATAACCTGGAGTCTCCAAGGAATACTTCTGCTGCTAAACGCAGGCCAAAGAGTGAACTAAGTTCTGATCTATCTACATCCAAGAAGAAAGG AAATGATGGGTATTACTATGAATGTGTAATATGTGATCTTGGTGGCAACTTGTTGTGCTGTGATAGCTGTCCCCGGGTGTATCATCTACAGTGCCTTGAT CCACCTCTAAAGCGCATTCCAATGGGAAAATGGCAATGCCCAAAGTGCTCTAAAAAAAGTGACCCGCTGAAGTCCATTAACCCACTGGGTTCCATTTCAA AACGTGCAAGAACAAAAGTTGTCACTACAAATTCTAGGACTGGAGTAAAGTCATCAGTCGCTGACAAAGTATCTGCTCTTTTTGGAAGCTCCATTGTCTC CAAGCGAAGGTCCTCCTGCAAAGGGAAATCTGTTCTAACAGTAGGATCCAAATCCGTGGAAAAAGACCCAGATTCCTTGTTATATGTATCTTCTAGCTCC AAGCCAAGTGATCCATCTGCTCTTGGTTCTGTAGATGGCACTTCATTGCATGTGAACATTGATGAAAAGAAACCTCCTGCATCTCCAAAGGAGTCATCAG CAGGGAAGAAATCAATTTCCCTTGCTGACGAACTTTTGTCTCGTTCTAAACTTACTGAATCCGAGCCAAATAATGAATGTTCTGGTGAGAAGCTTGTCTT GTCTTGCGATAATGGATCTCCAAGAAAGAAAATTGTTCTTGCAATTGGTGCAACCTCTGAGAACAGGAAAAGAAAGCTTGAAGGCTGTAGTGTGATCAGT TTTAAGAAGCACAGGACCAACAAGGGAAAACGCACTTCCAAAAAACATAGATCCAAAACCAATACTGCAAGTTCTGGGACTCATAAATCGAACCAGAAAC AGAAAGCTGTTAATCATGAGGTTTCTGTATTTTTGTCAGCAGAAGATGTTGAACTCAAGAACTTAAATTTGCAGAAGGATGAGAAGAATCCCGTGGAAGT TGCACAAACATTAGAAGAGTCATATAAAGCAGAGGTTCATGTGGAAGAAACCCAGAAATGTGAAGATATTATCATGACCGAACTTCAGCAGGTTGATCGG GTATTGGGCTGTCGGATTCAAGGTGATAATACAAGCTCGTCATGTGTTACATTTCAGATTACCAAAAATGACCAGCTTTCTGATGAATTGCTTATTCCAG AGTTTGAAAATGGACACCTAGAGGTAAAAGCTGTTTGTGATGTGGATTCAGATGCGGGGATTGCTGAAAATCATGTCGAGGGTCATCCTGACATTATTGA AAGTTCTGAGAAGGATGTAAGTGTGAGGAATGACATCAGAGTGGACACAATACGTGTATACAGAAGATCTGCAAGCAAAGACTGTAAAGGAGGGAACAAC AAGGATTTACTAGGGAAGGATGGAAAGGATTCAGGTTCTGGAGGCATAAGTGGTACGGATCAAGATGAATCTGCAATAACGACAGAAGTAACAGCGAAAA GACATGAAAATCCTGTGATTGAAGAAACCACTGATTTTTGTTTGAAAGGCTCTAGGGTTCAAATTTCTGAAGTTTGTGAAACGCATGTCTCTTCTAAAAT CAAAGACAGAAAAGAAGATGTGGAAATCAAAACTTGTGGTGGTGAAAATAAAGTACTGAAGCCTACCATGGAAGAACCAATATGCGTGAACAAAGGGACA ACTGTTTATGAATTCCTAGTTAAGTGGGTGGGGAGGTCTCATATACATAACAGTTGGATTTCAGAATCCCAGCTAAAAGTTCTTGCGAAGAGAAAACTAG AGAATTATAAGGCTAAGTATGGAAATACTGTGATAAATATCTGTGAGGAGAAGTGGAAGCAGCCCCAGCGGGTAATTGCTCTCCGTGGTTCTGAGGGCAG CAGGGAAGCTTTTGTAAAATGGACTGGTCTTCCTTATGACGAATGCACTTGGGAAAGTGTGGACGATCCTATTCTCAAAAAATCAGTTCATCTGATCAAT CAGTTTGATCAACTTGAACACCGGGCGTTGGAAAAAGATTCTGCAAGGGATGGTCTACGGAAAGGGAGGTGTGATGGTCTGCAAAATGAAATTGCTACTC TGGTGGAGCAACCAGAGGAGCTAAAAGGAGGCTCCTTGTTCCCTCACCAGCTCGAGGCATTGAATTGGTTGCGGAAGTGTTGGCATAGATCCAAAAATGT GATACTTGCTGATGAGATGGGGCTGGGAAAAACAGTATCTGCTTGTGCTTTTATTTCATCTTTGTATTTTGAGCTCAAAGTTTCTCTTCCCTGCTTGGTC TTGGTTCCACTTTCGACAATGCCTAACTGGCTCTCTGAGTTTGCACTGTGGGCTCCCAACTTAAATGTTGTGGAGTACCATGGGTGTGCAAAAGCAAGGG CCATGATTCGCCAGTATGAATGGCATGCTAGTAATCCCAATGAGATGAATAAGAAAACCACTTCCTACAAATTTAATGTTCTTTTAACTACTTATGAAAT GGTTCTTGCAGATTCCACTTATTTGCGTGGAGTTCCTTGGGAAGTTCTTGTAGTTGATGAGGGCCATAGACTTAAGAATTCAGGGAGCAAGCTGTTCAAT TTGCTCAATACGTTCTCTTTCCAACACCGTGTTCTTTTGACTGGTACCCCTCTTCAGAATAACATTGGTGAGATGTATAATTTGCTCAATTTCTTACAGC CAGCTTCATTCCCCTCTTTATCTTCCTTTGAGGAGAAATTTAATGATCTCACAACGACTGAAAAAGTGGAAGAACTGAAGAAACTTGTTGCACCACATAT GTTAAGAAGGCTTAAAAAGGATGCTATGCAAAATATCCCCCCCAAGACGGAACGAATAGTTCCTGTTGAGTTGTCTTCTATCCAAGCTGAATATTACCGA GCAATGCTAACGAAGAATTATCAAATGTTACGAAACATTGGGAAAGGAGTTGCACAACAATCGATGCTAAACATTGTGATGCAGCTGAGAAAAATTTGCA ATCATCCATATCTCATACCAGGTACTGAGCCTGATTCTGGGTCATTAGAATTTCTTCATGAAATGCGAATAAAAGCTTCGGCCAAGCTGACTCTGCTGCA TTCCATGCTCAAGATCTTATACAAGGAAGGGCATAGAGTTCTAATTTTTTCACAAATGACCAAGCTTCTTGATATCCTTGAGGATTATTTGAACATAGAG TTCGGCCCTAAAACATATGAGAGAGTGGATGGTTCTGTATCAGTCTCTGATCGCCAGACAGCAATTGCAAGATTTAACCAAGATAAAAGTCGATTTGTTT TCCTGTTGTCGACGCGCTCATGTGGCCTTGGAATCAATTTAGCATCCGCTGACACTGTCATTATTTATGATTCCGATTTCAACCCACATTCTGATATCCA AGCTATGAATCGAGCACATCGAATTGGGCAATCCAAAAGACTTCTGGTGTACAGGCTTGTTGTTCGTGCCAGTGTTGAAGAGCGCATCTTGCAACTTGCT AGAAAGAAACTAGTGCTTGATCAGCTCTTTGTGAATAAGTCTGGGTCTCAGAAAGAAGTGGAAGATATTCTACGATGGGGAACTGAAGAACTTTTTAGTG ATTCTTCAAGCATGAATGGGAAAGATAACAGTGAGAATAATATCAACAAAGATAAAGATGATGCAATAGCAGATCTGGAGCAAAAGCAGAGGAAGAGGGG TGGTGGCCTTGGGGATGTGTATCAGGATAAATGTACAGATTGTGGCAACAAGATTGTGTGGGATGAAAATGCAATATCAAAGTTACTTGACCGCTCAAAC CTCCAGTTTGCAACAACTGATGCTGCTGAAGGAGATTTTGAGAATGATATGCTTGGCTCAGTAAAGTCCTTGGAATGGAATGATGAAACAACAGAAGAGC AAGGGGGAGCTGAATCGCCAGTTGTGGTTGATGATACCTGTGGACAAAATCCTGAAAGGAAAGAGGAGAATGTGATAAATGTCACTGAAGAAAGTGAATG GGACAGGCTTTTGCGTGTAAGATGGGAGAAGTATCAAACCGAGGAGGAAGCTGCTCTTGGTCGAGGGAAACGCTTGAGGAAAGCTGTCTCTTACAGGGAA GCTTATGCTCCGCACCCAAACGAAACATTGAGTGAGAGTGGTGGTGAAGAGGACCGGGAACCAGAAGTGGAGCCTGAGCGGGAATATACACCAGCTGGAA GAGTTCTAAAGGCAAAATATGCTAAGCTTCGTGCTAGACAAAAAGAACGCCTTGCTCAGCGGAATTCAATTGAAGTATTTCATCCTAATGAGGGGCCTCC TATACCTGAGTTGGTTCCTCATTGTCTTCCTGCCAACAACACGGATGGGAATCAGGCAGTGGAGTTTGCTCAACAAGGCAGGGAGAAAAAGTCTTTTGTG ATTGACTTGGAGGATTATGAGTTCACTCAGCCAGATGCAACAAGGAGTAATGCCGATGCAACCATAAAGTCGGGCCACCTATCTAATCATAAGTTGAGAG GTCATCTGGATCTTTCTATTAACTCTCTTGGACACCCCTCTGACACAAAACTTCCAGCTCACCAAAATCAGGGCACAGGCAATGCAAACTTGCTTCTTTC CAACAACCTGTTACCAGTTCTAGGACTCTGTGCTCCCAACGCCAACCAATTGGATTTGTTGCACAAAAACTCTTCAAGATCCAAGGGTCGACAAAGCAAG CCAGTGACTGGGCCAGAATTTCCATTTAGTCTACCTCCTTGCTCTGGAACATCAATTGAGACGGATGTAAAACATCAGGAGACTACATCAGACAAGCCAA AATTGCTAGATGCATCAGCTGAAGTTTTGCAACAACGTCTTAAAAATAACTTATCAGATGGTTGGCACCCGTTTAGTCCGTGTCCACCACCTATATCACA TGGGAAAGATTCTGATCGTTTGGAAGGTTCCAGTTCCAGTTTTGCTGGTTTTCAGGAAAAGATGTCACTGCCAAACTTGCCTTTTGATGAGAAATTGCTG CCCAGATTCCCACTTCCTTCCAAGAGCATACCTAGTACACACCATGACTTACTACCCAGCTTGTCCCTGGGGAGAAGACTTGAAGCTGTAAATGACTCTA TGAGAGACCTTCCAGCAATGCCATTGTTGCCCAATTTGAAATTTCACCCTCAAGATGCAATAAGATATAATCAGCTGGAGAAGGAGGTTCCTCCCACACT GGGTTTGGGTCAGATGCCATCCTCTTTTCCATCATTTCCTGAAAACCACAGAAAGGTACTTGAGAACATAATAATGAGGACTGGCTCTGGATCCAGTAGC TTGTACAGTAAGAAATCAAAAGTAGATGTCTGGTCTGAGGATGAACTTGATTTCCTTTGGGTTGGTGTTCGGAGATATGGAAGGGGTAATTGGGATGCCA TGCTTAGAGACCCCAGGTTAAAATTCTCGAAGTACAAAACTTCAGAAGATTTAGCAGTTAGGTGGGAGGAGGAGCAACTCAAGTTTTTGGACGGGTCTGC TTTCCCATTGCTAAAGACGCTGAAGGCAACAAAGTCCTCCAAATCATCCTTGTTTCCCAGCATTCCTGAGGGAATGATGACACGGGCTTTGCATGGAAGC AGACCGTCAAAGTTTCAATCGCATCTGACAGACATGAAATTGGGTTTTGGTGATCTGTCTTCTAGCCTGCCACATTTTGAGCCATTGGATCAACTTAGTT TGCGGAATGAGCATTTTAGCCCAATTCCAACTTGGAATCCAGATGAACTGCAGGCGAATTTTGTTGGAGATTCTTCAGCGGGACCTTCTTTGCATGTTTC CTCTGAAAAGCCATTTCTGCTCAGTTCTTTTGGAGCAAGCAACTTGGCTACTCTTGGTTTGAATTCCTCAACCAGCTTTGATTTACAGCGAAGAGAGGAA GAATATGAAACCATGAAGTACGGAAAATTGCCTAGTCTTCTGGATAAATCAGTACACATATCGCGGGATTCCCAGAATAATGTGGGAATTGGTGAATTAA GCAATTCAGGTTTGTTCTTGCACCCAAGTAAATTCCTGAATCCAATAAATTCAAAGGGTAAAGAGGTAGTTGGAAGCAGTTCCTCTAACAAGTTGCCTCA TTGGCTTCGGGAAGCTGTTACTGCCCCTGTTAAACCGCCTGAACCTGAGCTGCCACCCACTGTATCAGCAATAGCACAATCAGTTCGTGTACTATATGGA GAAAATCAACCAACAATTCCTCCATTTGTTATTCCCGGTCCACCTCCCTCCCAACCAAAGGATCCAAGATGGATTTTGAGGAAGAAAAAGAAGCGGAGGT CACATATGTTCAGGCAGTTCCCCCTAGATACCGGGGGAAGTACCCAGGATTTTAGATACGGCATCCATGGCTGTAATGTTGCTTCCACCTCTATCCCTCC ACCGTTAGTTCCTGAAACTTCAGGCCGCCCATGGAATGAGTCTGACCTTAACCTGCCTCTTCCTAGTTTAAGCAAGATGAATTCATTGACTTCATCTGCT TATTTAAACGTACAGAAGAAAACAACCATGGGATTATCCCCCTCTCCTGAAGTTCTTCAATTGGTGGCATCCTGTGTTGCTCCAGGCCCACATTTAACCT CTGGTTCTGGTACAACAAGTTCAAGCATCCATGAAAGTAAAGTGCCCATGCGAAAATCTCCTGACCAAGTTGGAATGTCAGATTCACAAGTTGCTTCGGA TACAGAGCGGTTGCCACCTCAGGTGCAGAGCATGCTTCCAGAGAAGAGACCAGACCAACCTGATAGTGGTGATTCAAGCAAGACCGAGTCAGATTTTTCT CCAATAAAAAAGCCTGATGTAGAGGACATATCTTCTGAGGGAACTGTATCAGATCATCCTTTGAGTGATCATGAACCGTAG
AA sequence Show only first row Show all	>Potri.003G110100.12 pacid=42786409 polypeptide=Potri.003G110100.12.p locus=Potri.003G110100 ID=Potri.003G110100.12.v4.1 annot-version=v4.1 MKDNGSTSSKMISRNWVLKRKRKKILYGRVVSTSKEDNLESPRNTSAAKRRPKSELSSDLSTSKKKGNDGYYYECVICDLGGNLLCCDSCPRVYHLQCLD PPLKRIPMGKWQCPKCSKKSDPLKSINPLGSISKRARTKVVTTNSRTGVKSSVADKVSALFGSSIVSKRRSSCKGKSVLTVGSKSVEKDPDSLLYVSSSS KPSDPSALGSVDGTSLHVNIDEKKPPASPKESSAGKKSISLADELLSRSKLTESEPNNECSGEKLVLSCDNGSPRKKIVLAIGATSENRKRKLEGCSVIS FKKHRTNKGKRTSKKHRSKTNTASSGTHKSNQKQKAVNHEVSVFLSAEDVELKNLNLQKDEKNPVEVAQTLEESYKAEVHVEETQKCEDIIMTELQQVDR VLGCRIQGDNTSSSCVTFQITKNDQLSDELLIPEFENGHLEVKAVCDVDSDAGIAENHVEGHPDIIESSEKDVSVRNDIRVDTIRVYRRSASKDCKGGNN KDLLGKDGKDSGSGGISGTDQDESAITTEVTAKRHENPVIEETTDFCLKGSRVQISEVCETHVSSKIKDRKEDVEIKTCGGENKVLKPTMEEPICVNKGT TVYEFLVKWVGRSHIHNSWISESQLKVLAKRKLENYKAKYGNTVINICEEKWKQPQRVIALRGSEGSREAFVKWTGLPYDECTWESVDDPILKKSVHLIN QFDQLEHRALEKDSARDGLRKGRCDGLQNEIATLVEQPEELKGGSLFPHQLEALNWLRKCWHRSKNVILADEMGLGKTVSACAFISSLYFELKVSLPCLV LVPLSTMPNWLSEFALWAPNLNVVEYHGCAKARAMIRQYEWHASNPNEMNKKTTSYKFNVLLTTYEMVLADSTYLRGVPWEVLVVDEGHRLKNSGSKLFN LLNTFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTEKVEELKKLVAPHMLRRLKKDAMQNIPPKTERIVPVELSSIQAEYYR AMLTKNYQMLRNIGKGVAQQSMLNIVMQLRKICNHPYLIPGTEPDSGSLEFLHEMRIKASAKLTLLHSMLKILYKEGHRVLIFSQMTKLLDILEDYLNIE FGPKTYERVDGSVSVSDRQTAIARFNQDKSRFVFLLSTRSCGLGINLASADTVIIYDSDFNPHSDIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLA RKKLVLDQLFVNKSGSQKEVEDILRWGTEELFSDSSSMNGKDNSENNINKDKDDAIADLEQKQRKRGGGLGDVYQDKCTDCGNKIVWDENAISKLLDRSN LQFATTDAAEGDFENDMLGSVKSLEWNDETTEEQGGAESPVVVDDTCGQNPERKEENVINVTEESEWDRLLRVRWEKYQTEEEAALGRGKRLRKAVSYRE AYAPHPNETLSESGGEEDREPEVEPEREYTPAGRVLKAKYAKLRARQKERLAQRNSIEVFHPNEGPPIPELVPHCLPANNTDGNQAVEFAQQGREKKSFV IDLEDYEFTQPDATRSNADATIKSGHLSNHKLRGHLDLSINSLGHPSDTKLPAHQNQGTGNANLLLSNNLLPVLGLCAPNANQLDLLHKNSSRSKGRQSK PVTGPEFPFSLPPCSGTSIETDVKHQETTSDKPKLLDASAEVLQQRLKNNLSDGWHPFSPCPPPISHGKDSDRLEGSSSSFAGFQEKMSLPNLPFDEKLL PRFPLPSKSIPSTHHDLLPSLSLGRRLEAVNDSMRDLPAMPLLPNLKFHPQDAIRYNQLEKEVPPTLGLGQMPSSFPSFPENHRKVLENIIMRTGSGSSS LYSKKSKVDVWSEDELDFLWVGVRRYGRGNWDAMLRDPRLKFSKYKTSEDLAVRWEEEQLKFLDGSAFPLLKTLKATKSSKSSLFPSIPEGMMTRALHGS RPSKFQSHLTDMKLGFGDLSSSLPHFEPLDQLSLRNEHFSPIPTWNPDELQANFVGDSSAGPSLHVSSEKPFLLSSFGASNLATLGLNSSTSFDLQRREE EYETMKYGKLPSLLDKSVHISRDSQNNVGIGELSNSGLFLHPSKFLNPINSKGKEVVGSSSSNKLPHWLREAVTAPVKPPEPELPPTVSAIAQSVRVLYG ENQPTIPPFVIPGPPPSQPKDPRWILRKKKKRRSHMFRQFPLDTGGSTQDFRYGIHGCNVASTSIPPPLVPETSGRPWNESDLNLPLPSLSKMNSLTSSA YLNVQKKTTMGLSPSPEVLQLVASCVAPGPHLTSGSGTTSSSIHESKVPMRKSPDQVGMSDSQVASDTERLPPQVQSMLPEKRPDQPDSGDSSKTESDFS PIKKPDVEDISSEGTVSDHPLSDHEP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.003G110100 [exp]	0	1
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.006G187400 [exp]	1.41	0.8826
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Potri.017G072460 [exp]	2.82	0.8697
AT1G18950			DDT domain superfamily (.1)		Potri.012G072200 [exp]	5.09	0.8800
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Potri.001G029600 [exp]	8.36	0.8337
AT2G33730			P-loop containing nucleoside t...		Potri.012G045800 [exp]	10.24	0.8665
					Potri.010G163501 [exp]	10.58	0.8310
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Potri.007G071600 [exp]	12.00	0.8591
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Potri.002G097700 [exp]	12.32	0.8276
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Potri.014G083700 [exp]	12.72	0.8621
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Potri.008G211100 [exp]	13.00	0.8407	PLDP1.1

Compare expression of checked genes

Potri.003G110100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.