Plant FIBer expression Database

Potri.003G110200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G19980 51 / 5e-09 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G123300
[exp]
132 / 5e-41 AT4G19980 71 / 2e-16 unknown protein
Potri.006G259300
[exp]
37 / 0.0007 AT5G25240 47 / 2e-07 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.003G110200.2 pacid=42785389 polypeptide=Potri.003G110200.2.p locus=Potri.003G110200 ID=Potri.003G110200.2.v4.1 annot-version=v4.1
ATGGCGCAAATGTTGCTCCTTTGGTGGTCAAAAACCACCACCAAGACTGGTGGTGTTGATACCATTGCCACCACCAGTAAGACCGTTGAAAATATTGGCA
GTACACAAAATTGTTTTTGTGGGTGTCTAACAAAGCTTTTGAAGAAGCTAAAGAAGAGAGGAAGAGTGATACGCGCTGCCGCTGCAAGTAGGCAATCTTC
ATTCCAGTGCCGGTATGATCCATTGAGTTATTCTCTCAATTTTGATACAAGTGGGCATGATGAAGATTACTACCACTTCTGTGCTTTCACGTCAAGGTTT
GTGGCCAACCCATCAAGAAGCAGGATCAGTACTGCATCCTCTTCTTCAAGAATACTAGGGGCCACTTCTCACTAG
AA sequence
>Potri.003G110200.2 pacid=42785389 polypeptide=Potri.003G110200.2.p locus=Potri.003G110200 ID=Potri.003G110200.2.v4.1 annot-version=v4.1
MAQMLLLWWSKTTTKTGGVDTIATTSKTVENIGSTQNCFCGCLTKLLKKLKKRGRVIRAAAASRQSSFQCRYDPLSYSLNFDTSGHDEDYYHFCAFTSRF
VANPSRSRISTASSSSRILGATSH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G19980 unknown protein Potri.003G110200
[exp]
0 1
AT1G20190 ATHEXPALPHA1.14... EXPANSIN 11, expansin 11 (.1) Potri.005G244100
[exp]
3.87 0.8732 Pt-ATEXPA11.1,PtrEXPA18
AT3G03680 C2 calcium/lipid-binding plant... Potri.013G066500
[exp]
4.00 0.8538
AT3G62630 Protein of unknown function (D... Potri.005G019600
[exp]
7.93 0.8528
AT1G64690 BLT BRANCHLESS TRICHOMES, branchle... Potri.001G082600
[exp]
12.32 0.8494
AT1G65590 HEXO3, ATHEX1 beta-hexosaminidase 3 (.1) Potri.008G079400
[exp]
16.30 0.8431
AT5G14920 Gibberellin-regulated family p... Potri.001G350600
[exp]
20.24 0.8460
AT1G67590 Remorin family protein (.1.2) Potri.010G056800
[exp]
23.91 0.7955
AT1G01110 IQD18 IQ-domain 18 (.1.2) Potri.012G022500
[exp]
24.85 0.8454
AT5G58600 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44... Potri.001G278300
[exp]
28.14 0.8006
AT5G66800 unknown protein Potri.007G042600
[exp]
32.49 0.8136

Potri.003G110200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.