Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15090 800 / 0 FAR1_related FAR1 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) AT3G22170 764 / 0 FAR1_related FHY3 far-red elongated hypocotyls 3 (.1.2) AT4G19990 711 / 0 FAR1_related FRS1 FAR1-related sequence 1 (.1.2) AT1G76320 629 / 0 FAR1_related FRS4 FAR1-related sequence 4 (.1.2) AT2G32250 582 / 0 FAR1_related FRS2 FAR1-related sequence 2 (.1.2.3.4) AT4G38180 459 / 4e-149 FAR1_related FRS5 FAR1-related sequence 5 (.1) AT2G27110 396 / 2e-124 FAR1_related FRS3 FAR1-related sequence 3 (.1.2.3) AT1G52520 345 / 8e-107 FAR1_related FRS6 FAR1-related sequence 6 (.1) AT1G80010 334 / 3e-102 FAR1_related FRS8 FAR1-related sequence 8 (.1) AT3G06250 322 / 2e-97 FAR1_related FRS7 FAR1-related sequence 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G020700 [exp] 828 / 0 AT3G22170 1184 / 0.0 far-red elongated hypocotyls 3 (.1.2) Potri.006G020600 [exp] 823 / 0 AT4G15090 1078 / 0.0 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) Potri.016G018300 [exp] 812 / 0 AT3G22170 1139 / 0.0 far-red elongated hypocotyls 3 (.1.2) Potri.016G018100 [exp] 736 / 0 AT2G32250 793 / 0.0 FAR1-related sequence 2 (.1.2.3.4) Potri.003G207100 [exp] 701 / 0 AT1G76320 947 / 0.0 FAR1-related sequence 4 (.1.2) Potri.004G209000 [exp] 485 / 6e-159 AT4G38180 1163 / 0.0 FAR1-related sequence 5 (.1) Potri.009G170100 [exp] 482 / 9e-158 AT4G38180 1145 / 0.0 FAR1-related sequence 5 (.1) Potri.011G145800 [exp] 458 / 2e-148 AT4G38180 1003 / 0.0 FAR1-related sequence 5 (.1) Potri.005G257600 [exp] 437 / 6e-141 AT4G38180 891 / 0.0 FAR1-related sequence 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031825 [exp] 509 / 9e-172 AT1G76320 656 / 0.0 FAR1-related sequence 4 (.1.2) Lus10010073 [exp] 58 / 3e-08 AT1G64260 155 / 3e-39 MuDR family transposase (.1) Lus10034360 [exp] 52 / 4e-06 AT3G02260 5990 / 0.0 UMBRELLA 1, TRANSPORT INHIBITOR RESPONSE 3, LOW PHOSPHATE-RESISTANT ROOT 1, DARK OVER-EXPRESSION OF CAB 1, CORYMBOSA1, ATTENUATED SHADE AVOIDANCE 1, auxin transport protein (BIG) (.1) Lus10026854 [exp] 48 / 2e-05 AT3G59470 121 / 1e-32 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Lus10020226 [exp] 47 / 3e-05 AT3G59470 120 / 7e-33 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Lus10023137 [exp] 46 / 3e-05 AT5G18960 46 / 3e-06 FAR1-related sequence 12 (.1) Lus10026732 [exp] 43 / 0.0002 AT3G07500 88 / 2e-22 Far-red impaired responsive (FAR1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03101 [poplar] [flax] FAR1 FAR1 DNA-binding domain CL0274 [poplar] [flax] PF04434 [poplar] [flax] SWIM SWIM zinc finger CL0219 [poplar] [flax] RNase_H PF10551 [poplar] [flax] MULE MULE transposase domain
Representative CDS sequence Show only first row Show all	>Potri.003G110300.6 pacid=42786136 polypeptide=Potri.003G110300.6.p locus=Potri.003G110300 ID=Potri.003G110300.6.v4.1 annot-version=v4.1 ATGGGGATAGATCTGGAGCAACCTTCAGGAGAATATCATAAGGAAGATAGAAGGCCCAATGTGAATGTTAATACGGTGGATGGTGGTGATGGAGGACATG AAAGAGATCAAATCATTGTGAATTCTCCTGACATTGGTGGGAATGGTTGTGAGAAGACTGGAACAGTTATAAATGGAAGAGTTCTTGATGGTAGAAAAAA ACCAAATGCTGGAGATGGAATAAACTTGAACTCTGTGAAAGATGCAGAGCCCCATGATGGAATGGAATTTGAATCGAAGGATGAAGCATTTTCATTCTAC AAAGAGTATGCTAAGTCTGTGGGATTTTCCACCATAACAAAAGCGAGCCGACGATCAAGGATATCTGGAAAATTTATTGACGCAAAGTTTGTGTGCACTA GATATGGGACCAAGCGGGACACCAGTACAATTGAATTGCCACAGCCTGTTTCAAATGCAGATGCTGCAACAAGCCTTCCTGTCAAGAGAAAACGTGGTAG AATAAATCAGTCTTGGTCAAAAACAGATTGCAAAGCTTGCATGCATGTTAAGAGAAGGCAGCAAGATGGAAGATGGGTTGTCCGCAGTTTCATAAAGGAG CACAACCATGAAATCTTTCCCGACCAGGCATATTACTTTCGCGGTCATAGGAATTTAAATCTGGGTAACGACAATGTTGATGCGTTGCATGCTATCAGGG CGAGGACAAAAAAATTGTATGTTGCAATGTCTAGACAATCAAGTGGGCATAGGAAACATGAGAACCTGAAGGGTGGTGTTACAAATCCATCTGGCAACAC AAAGCATTTGGCTTTGGATGAAGGAGATGCTCAAGCTATGCTTGATCATTTTATGCATATGCAAGATGAGAATCCCAACTTCTTTTATGCAATCGATCTG AATGAAGAACAGCAGTTGAGAAATGTTTTCTGGGTTGATGCCAAAGGTAGGCTTGATTATGGAAATTTCGGTGATGTCATTTTCTTTGATACCACATATC TCAAGAACGAGTACAAATTGCCATTTGCTCCGTTTATTGGTGTTAACCACCACTTCCAGTTTCTGTTGCTTGGATGTGCATTAGTTGCTGATGAAACTAA AACAACATATGTTTGGTTGATGCGAGCATGGCTTCGGGCAATGGGTGGTCATGCTCCAAGAGTGATACTCACCGACCAAGACAATGCCCTGAAAGAAGCT ATTCAAGAGGTCTTTCCTAATTCACGCCATTGTTTTTGCTTGTGGCATGTATTCAGCAAGATTCCTGAGAAGCTGAGTTATGTGACAAGGCAGCATGAAA ATTTCATGTTGAAATTTAAGAAATGCATCTTTAAGTCTTGGACCAGTGAACAGTTCGAAAAAAGATGGTGGAAAATGGTCGAGATATTCAATTTAAGAAA TGACGTATGGTTTCAATCGTTGTATGAAGATCGTCAAAGATGGATACCGGTTTTCATGATAGACAACTTTTTGGCAGGGATGTCTACGACCCAGCGGTCA GAAAGTATAAACACTTTATTTGACAGATACATGCAAAGGAAAACCACCCTGAAAGAGTTTCTTGAACTGCAAAAAGCAATGCTACAAGAGAAGTTCGAAG AGGAAGCAAAAGCAGATTTTGAAACTTGGCACAAGCAACCAGGGTTGAAATCTCCATCACCCTTTGGGAAACAAATGGCCTCAATATACACACATGCAAT ATTTAAAAAGTTCCAGGTTGAGGTTTTAGGAGTCGTTGCTTGTCATCCTAGAAAAGAGACTGAAGATGGAGAAACCCAAACTTTCAAAGTTCAAGATTTC GAAGATAACCAATATTTCATTGTGGTGTGGAATGAGATGACATCATATCTATCTTGTTCATGCCGTTTGTTTGAGTTTAATGGTTTTCTTTGTAGACACG TGTTGATTGTTATGCAAATGTCAGGTCTGCACAGCATTCCATCTCAGTATATATTGAAACGTTGGACAAAGGATGCAAAGAGCAGACAAATTATGAGAGA AGAGTCAGATGTGGTCGAGTCCAGGGTTCAACGCTACAACGATCTTTGTCGACGGGCCTTTAAACTGGGTGATGAAGGTTCTTTATCTCAAGAGAGTTAC AATATTGCATTCAATGCACTGGAAGAAGCTTTGAGAAAGTGCGAGAGTGTTAATAATTCAATTCAAAACATAATAGAACCAACTTCGCCCCCTTCAAACG GTCCTCTTGACTATGATGAAGTGAATCAAGCTCATGGTGCAACCAAGACAAATAAGAAGAAAGATACATCCAGAAAGAAGCAGGTACATCCAGACCCAGA GGTCATACCCATTCGGATGCATGATAGCTGGCAACAAATGGAACAACTAAACTCAAGGGTTCCAACTCTCGATGGGTATTTTGGCTCTCAACAAACTGGG CAGGGAATGGGACAACTAAATGCCATAGCTTCTAGTCGTGATGATTGTTATAGTAATCCACATAGCATGCAAGGGCTGGGACAATTGAATGCTACTGCAC CAAATGATGATGCTCATTACATGATGCAACAAAGGATGCAAGGGATGGGGCAGATACAATTCAGACCGCAGACTATTCCCAGTTTTTTCGATGTGCAGGA TGGTCTACAAGAAATGGACTCATCAAATCTGGGATCCTCTCAGTTGCATGGCTTGGCAACTAAACATTTGCATCAGAAACATCTATCTCGTTAG
AA sequence Show only first row Show all	>Potri.003G110300.6 pacid=42786136 polypeptide=Potri.003G110300.6.p locus=Potri.003G110300 ID=Potri.003G110300.6.v4.1 annot-version=v4.1 MGIDLEQPSGEYHKEDRRPNVNVNTVDGGDGGHERDQIIVNSPDIGGNGCEKTGTVINGRVLDGRKKPNAGDGINLNSVKDAEPHDGMEFESKDEAFSFY KEYAKSVGFSTITKASRRSRISGKFIDAKFVCTRYGTKRDTSTIELPQPVSNADAATSLPVKRKRGRINQSWSKTDCKACMHVKRRQQDGRWVVRSFIKE HNHEIFPDQAYYFRGHRNLNLGNDNVDALHAIRARTKKLYVAMSRQSSGHRKHENLKGGVTNPSGNTKHLALDEGDAQAMLDHFMHMQDENPNFFYAIDL NEEQQLRNVFWVDAKGRLDYGNFGDVIFFDTTYLKNEYKLPFAPFIGVNHHFQFLLLGCALVADETKTTYVWLMRAWLRAMGGHAPRVILTDQDNALKEA IQEVFPNSRHCFCLWHVFSKIPEKLSYVTRQHENFMLKFKKCIFKSWTSEQFEKRWWKMVEIFNLRNDVWFQSLYEDRQRWIPVFMIDNFLAGMSTTQRS ESINTLFDRYMQRKTTLKEFLELQKAMLQEKFEEEAKADFETWHKQPGLKSPSPFGKQMASIYTHAIFKKFQVEVLGVVACHPRKETEDGETQTFKVQDF EDNQYFIVVWNEMTSYLSCSCRLFEFNGFLCRHVLIVMQMSGLHSIPSQYILKRWTKDAKSRQIMREESDVVESRVQRYNDLCRRAFKLGDEGSLSQESY NIAFNALEEALRKCESVNNSIQNIIEPTSPPSNGPLDYDEVNQAHGATKTNKKKDTSRKKQVHPDPEVIPIRMHDSWQQMEQLNSRVPTLDGYFGSQQTG QGMGQLNAIASSRDDCYSNPHSMQGLGQLNATAPNDDAHYMMQQRMQGMGQIQFRPQTIPSFFDVQDGLQEMDSSNLGSSQLHGLATKHLHQKHLSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15090	FAR1_related	FAR1	FAR-RED IMPAIRED RESPONSE 1, F...		Potri.003G110300 [exp]	0	1
AT1G43620		UGT80B1, TT15	TRANSPARENT TESTA 15, UDP-Glyc...		Potri.005G193100 [exp]	1.41	0.8658
AT4G24900			unknown protein		Potri.012G098000 [exp]	3.46	0.8498
AT4G00500			alpha/beta-Hydrolases superfam...		Potri.014G083600 [exp]	4.00	0.8271
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Potri.006G143300 [exp]	4.24	0.8581	PAFC901
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.010G219600 [exp]	4.35	0.8664
AT3G06670			binding (.1.2)		Potri.008G107300 [exp]	8.48	0.8364
AT5G54260		MRE11, ATMRE11	ARABIDOPSIS MEIOTIC RECOMBINAT...		Potri.001G407300 [exp]	10.58	0.8123	Pt-MRE11.1
AT2G26780			ARM repeat superfamily protein...		Potri.001G274500 [exp]	10.81	0.8136
AT1G77310			unknown protein		Potri.002G078800 [exp]	11.31	0.8104
AT1G63500			Protein kinase protein with te...		Potri.001G104700 [exp]	11.48	0.8069

Compare expression of checked genes

Potri.003G110300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.