Plant FIBer expression Database

Potri.003G110600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G02065 73 / 1e-13 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G140100
[exp]
71 / 5e-13 AT3G02065 681 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008509
[exp]
506 / 2e-178 AT3G02065 76 / 1e-14 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Lus10006736
[exp]
72 / 2e-13 AT3G02065 686 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Lus10020088
[exp]
72 / 4e-13 AT3G02065 677 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0175 TRASH PF04438 zf-HIT HIT zinc finger
Representative CDS sequence
>Potri.003G110600.1 pacid=42786088 polypeptide=Potri.003G110600.1.p locus=Potri.003G110600 ID=Potri.003G110600.1.v4.1 annot-version=v4.1
ATGGGAACGAGAACAAATTTCTACAAGACGCCTTCTCTCTCTTACAAAAAAGACTTAAATCTCTCCTCCGCTCTTCAAAACCTAAAGGCTTATAACATCG
CCACCGGTAATGCTCCTTTAACTACAGAAGAAGAAGATGAGCAACAACCTCGCGGCGACAGCAAAATTGCCCGCCCGAAACGACAACGTATTCAGAAAAA
TCCACAGCACAATAAGCACGGCCATGCGATTGAGGAGAATGATGAACCGATGTCTCACCTGGATTACATAAATAAGAGAAGGAAAGAAGTTAGCTCATCT
AATCAGTCGTATGAAAATTTAACTTCTGATGTTCTAGTGCAGGGAAATACGATCTCTGTTTTAAATTTGGTAAATTATGGAAGTGATTCTTCGGAATCTG
AAGAGAAGGAGGGTTCCTCAGGTTCTAGACAGGATGATACCTTGCATTCTGATCATCCAAATGAAGTTGATCGAGTGAAGTCTAGAAGTGAGCAACGGTA
TCCTGTCCCAGGAGAGCCTGTTTGTTTGTTATGTGGAAAATATGGTGAATATATTTGCAATGAGACCGATGATGATATCTGCAGCTTGGAATGCAAAGCT
GAGCTTCTGCAAAGTCTGAAACTTGCTAAGGGTCCAGCAAGCAATCAACAACTCGATGTCTCTTCATCTGGATTCAAATGTGCCTTGCCAATGCCATTGC
TTGGAGAGGACACGTGGGACTATAATCGCCATCGCTGGTCCAAAAAGATATCTAATCTTTGTGCTTATGAGTGTTGGAAATGTCAGAGGCCTGGACACCT
TCCGGAAGACTGTTTGGTGACAACATCTAATCAGGTGGCAGTGGGGAATAAGAACTCTGATTCCATATCCAGAGATCTTCTTGGACTTTATGGAAGATGT
CATCAGATTGGTAAAAAATTGTCTGGAGCAAACTGCAATACCTGCCGCGGTTCCTTAAGTTTGGCAACTTGCCTTGATTGCAGTATGATCCTCTGTGACA
ATGCAGGCCATTTACATGAGCATATAAGGGCACAACCATCCCATCAGCAATATTACTCTCATAAACTCAAGCGTTTGGTCAAATGCTGCAAATCAACATG
CAAGGTGACTAGCATTAGTGATCTTTTGGTTTGCCACCACTGTTTTGATAAAGCCTTCGACAAGTTCTATGATATGTATACTGCAACTTGGAAAGGAACT
GGACTTTCCATTATCTCTGGCTCTATTTGCTGTGAAGATCACTTTGAATGGCATAGGATGAATTGCTTGAGTGCAGGTGTAGAGGACAGAGCATATATCA
TTGATAAGAATGCCAATAAGAAATGTGTTCAACTTAGTGACTTCATTTTCTGA
AA sequence
>Potri.003G110600.1 pacid=42786088 polypeptide=Potri.003G110600.1.p locus=Potri.003G110600 ID=Potri.003G110600.1.v4.1 annot-version=v4.1
MGTRTNFYKTPSLSYKKDLNLSSALQNLKAYNIATGNAPLTTEEEDEQQPRGDSKIARPKRQRIQKNPQHNKHGHAIEENDEPMSHLDYINKRRKEVSSS
NQSYENLTSDVLVQGNTISVLNLVNYGSDSSESEEKEGSSGSRQDDTLHSDHPNEVDRVKSRSEQRYPVPGEPVCLLCGKYGEYICNETDDDICSLECKA
ELLQSLKLAKGPASNQQLDVSSSGFKCALPMPLLGEDTWDYNRHRWSKKISNLCAYECWKCQRPGHLPEDCLVTTSNQVAVGNKNSDSISRDLLGLYGRC
HQIGKKLSGANCNTCRGSLSLATCLDCSMILCDNAGHLHEHIRAQPSHQQYYSHKLKRLVKCCKSTCKVTSISDLLVCHHCFDKAFDKFYDMYTATWKGT
GLSIISGSICCEDHFEWHRMNCLSAGVEDRAYIIDKNANKKCVQLSDFIF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G02065 P-loop containing nucleoside t... Potri.003G110600
[exp]
0 1
AT3G16890 PPR40 pentatricopeptide (PPR) domain... Potri.008G108300
[exp]
2.00 0.8427
AT4G13980 HSF AT-HSFA5 HEAT SHOCK TRANSCRIPTION FACTO... Potri.001G320900
[exp]
3.00 0.8094 Pt-HSFA5.1
AT1G69360 Plant protein of unknown funct... Potri.017G088900
[exp]
14.96 0.7578
AT3G18640 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.005G061100
[exp]
19.13 0.7969
AT4G36990 HSF AT-HSFB1, ATHSF... ARABIDOPSIS THALIANA HEAT SHOC... Potri.007G043800
[exp]
19.59 0.7739
AT5G44950 F-box/RNI-like/FBD-like domain... Potri.012G099400
[exp]
20.49 0.7826
AT1G70520 ASG6, CRK2 ALTERED SEED GERMINATION 6, cy... Potri.010G043800
[exp]
20.78 0.7966
AT3G21320 unknown protein Potri.003G045000
[exp]
24.69 0.7977
AT2G35050 Protein kinase superfamily pro... Potri.001G123500
[exp]
24.81 0.7968
Potri.001G318600
[exp]
25.41 0.7850

Potri.003G110600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.