Plant FIBer expression Database

Potri.003G110700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G47580 697 / 0 ASG7 ALTERED SEED GERMINATION 7, unknown protein
AT4G17250 682 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G123100
[exp]
1184 / 0 AT5G47580 725 / 0.0 ALTERED SEED GERMINATION 7, unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004355
[exp]
804 / 0 AT4G17250 697 / 0.0 unknown protein
Lus10000731
[exp]
643 / 0 AT4G17250 586 / 0.0 unknown protein
Lus10008508
[exp]
638 / 0 AT4G17250 583 / 0.0 unknown protein
Lus10028936
[exp]
635 / 0 AT4G17250 525 / 3e-179 unknown protein
PFAM info
Representative CDS sequence
>Potri.003G110700.1 pacid=42784665 polypeptide=Potri.003G110700.1.p locus=Potri.003G110700 ID=Potri.003G110700.1.v4.1 annot-version=v4.1
ATGGGGAAGCTGGGCTGCGGTATCGATGGGAATCTGAATGAAGCGAAGTTCAGTGAACCCATGCCATGGATTGGCCTCTATATAGCAGCAGCATCTCTGG
CCTGTGCACTTGCTATGGCTGTAGATTTCATCCGTGGCTTCCGCCGACGGAAGTTCTGGTTCCCGAGCAAATACTTCTCCATCAATGCCACTTCACTGAC
CATAATAGCTGTGGCAGTCAAGCTGTCAGTGGATCTAAACACCGCCATGCCTCGCCGTGTTGATCAGCTCGCAAAACTTAGCAGTGGTGCCTTGCTCTGT
ACAGTAATGGGTAATTCCATGCCTTCTCTGGGAGCCATGGACAACAGTGATTTATGCACAAATATGATAGCTTTAGGAATTCTCGTTATTACTGTTATTG
TTAATATAGGCATCCAATTAGGCACCGGTGTTATATATCTTTACTGGAAAGAGCATGTATTTATTATGTTTCTCATGCTTATTTTGCTTTTAATCCTAAG
CTTTTCAGCATTAACTGTGCCGATAAATAATAAATATTTCCAATATAAATATAATAAGAAATATGATATGGCTCTTAAAGAAGACTCGAACGAAACCAGC
AAAAGGGAAGGCAAGGAACTTAAAGAAGAATTAATGAAATTCTGGATGATGGCTCATACCTGCAGCCCCCAGTTCGTGGTGGGCCGTTCAGTTACATGCT
CTGCCTCAGGTGCATTCTGTCTCCTTGGTGCCATGACTTTAGCTGAGGCCATGCTGCGATCTTACTTGATGCCCCGGTCATTCAAATTCTGCACCGGAGA
ATCTGAGTATAAGTGGTCGACCATCGTAGTTCTTATTACACAGACCATTGCAGTGGGAGTTGGTACTATTGCCCCTGCAATCAGATGGTTCAGTGCTCTG
AACTTCGGATGCCCAACCAGAAGAAAGAAAAGCAGCAAAAGAATATTTACAGTAGAAAGGTACTGGATCCAGTTGCTTGTGGAGATGAAAGAGTGCCCAC
TAGCCATACGAATCCAGGACCGATTTTGCAGGAAACTTGCCCACTATGTTAATAACAAATTGGTGGACCTCTGTCTTGGAATGCAAACTGGAATTGTGTT
GGGTAGCAAAGTGATTCAATTCATTTCAGTTTACTCCATGATCTGGATGTTATCACTCTCCGATCACTGCAAGAAGTTAAGAACAATGAAACCCGACAAC
AGCATATCATCTGTCTCAGGATCAGAATCACGATCCAGTACAAAACCAGATCTCAGCCGTTTTGTTTTGCATCTTGAAGGTGAAGACGAACTAGTTGAGT
TGATGATGAAGAAGAACTTTGATACCACTGATCATTGGCTGCGAAGGGGGAAAAGGAAACAGCCAAAGCATCTCATGGAACTGTTGGAAAAATCAACCGT
TGCAGAAGGATTTAAGGGGGTGAAAGAGTTTGACAGTGACCTAGTTCTCTCTCTAGATTGTGATGAACCTCCAAACTGTTGGGCTCTTCCTGTAGTAACT
CTGACAGCCATTGCAGTTGCACTTCCAGATGTCAGTGGTGGTTTGATGAAACAGTTGATGCTCAGTGTACATGAAGGCCTCATGTATGTCAGACTCATAG
AAGATAACCTGGACGCGAAGGGAGAATTGATTAACATCAGGAAAGCAGCAAATGTTGTATGGCTTGGAGTTGATCTCGACAACAAGTGGCTAGATGTGGA
CCTTCGAAAACTGTCCGTACAAGCAGAAAGCACAAAGGAAATACTTGAGAAACTATCTGATGTTGCAAAGACCAGGTTTGTGGAGTGTAAGAAGATATTT
ATGAATCAATGTCTGAAGGAAAGACCTTCAAAGTGGCCCATCAAGGTTCTGGCTGCTAATTCCATGTATAGGATAAGCCAAACTCTTCTGCAGAATTGTG
AAAGTAGAAATGACTTGGTCGACGAAAGATTATTTGAAGCTTTAACTGTCATGATCTCTGATATACTGGGTGCTTGTCTCACTAACTTACGGCCTGTCAT
ATTCCACTGTTTGAGCAGGGCTGTCATCGAGAGGGAATACTGTGTACGCAGGGCAGTTCACATTCTTGGAAAAACAGAAAAGATCCGGAAACTTCTAGAT
CAGCGGCCTATTTCCACTTTAGATCCAGATCGAATGGCCTGCATTGATGAGTGGCGTTCATTGAATGATTTGAAGACCTCTTCGCCCTTCATTCCATCTT
CTTCAGCAAAGAGTGAAACAGTCTTCTCCACTTCAAGCGACTTGTATCTAACCATGGAATAA
AA sequence
>Potri.003G110700.1 pacid=42784665 polypeptide=Potri.003G110700.1.p locus=Potri.003G110700 ID=Potri.003G110700.1.v4.1 annot-version=v4.1
MGKLGCGIDGNLNEAKFSEPMPWIGLYIAAASLACALAMAVDFIRGFRRRKFWFPSKYFSINATSLTIIAVAVKLSVDLNTAMPRRVDQLAKLSSGALLC
TVMGNSMPSLGAMDNSDLCTNMIALGILVITVIVNIGIQLGTGVIYLYWKEHVFIMFLMLILLLILSFSALTVPINNKYFQYKYNKKYDMALKEDSNETS
KREGKELKEELMKFWMMAHTCSPQFVVGRSVTCSASGAFCLLGAMTLAEAMLRSYLMPRSFKFCTGESEYKWSTIVVLITQTIAVGVGTIAPAIRWFSAL
NFGCPTRRKKSSKRIFTVERYWIQLLVEMKECPLAIRIQDRFCRKLAHYVNNKLVDLCLGMQTGIVLGSKVIQFISVYSMIWMLSLSDHCKKLRTMKPDN
SISSVSGSESRSSTKPDLSRFVLHLEGEDELVELMMKKNFDTTDHWLRRGKRKQPKHLMELLEKSTVAEGFKGVKEFDSDLVLSLDCDEPPNCWALPVVT
LTAIAVALPDVSGGLMKQLMLSVHEGLMYVRLIEDNLDAKGELINIRKAANVVWLGVDLDNKWLDVDLRKLSVQAESTKEILEKLSDVAKTRFVECKKIF
MNQCLKERPSKWPIKVLAANSMYRISQTLLQNCESRNDLVDERLFEALTVMISDILGACLTNLRPVIFHCLSRAVIEREYCVRRAVHILGKTEKIRKLLD
QRPISTLDPDRMACIDEWRSLNDLKTSSPFIPSSSAKSETVFSTSSDLYLTME

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G47580 ASG7 ALTERED SEED GERMINATION 7, un... Potri.003G110700
[exp]
0 1
Potri.006G088616
[exp]
2.64 0.8385
AT3G19480 D-3-phosphoglycerate dehydroge... Potri.014G022800
[exp]
3.46 0.8123
Potri.006G088500
[exp]
4.69 0.8304
AT3G51970 ATASAT1, ASAT1,... ARABIDOPSIS THALIANA STEROL O-... Potri.001G260700
[exp]
10.39 0.7931
AT2G16770 bZIP bZIP23 Basic-leucine zipper (bZIP) tr... Potri.001G020200
[exp]
12.48 0.7967
AT4G17570 GATA GATA26 GATA transcription factor 26 (... Potri.003G082800
[exp]
15.19 0.7948
AT1G12700 RPF1 RNA processing factor 1, ATP b... Potri.005G050240
[exp]
20.97 0.7967
AT1G06620 2-oxoglutarate (2OG) and Fe(II... Potri.010G073300
[exp]
20.97 0.7929
Potri.009G169400
[exp]
24.00 0.7384
AT3G54540 ABCF4, ATGCN4 ATP-binding cassette F4, gener... Potri.016G015550
[exp]
24.49 0.7576

Potri.003G110700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.