Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17260 477 / 3e-171 Lactate/malate dehydrogenase family protein (.1) AT3G15020 59 / 4e-10 mMDH2 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) AT1G53240 59 / 5e-10 mMDH1 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G122400 [exp] 517 / 0 AT4G17260 545 / 0.0 Lactate/malate dehydrogenase family protein (.1) Potri.008G135920 [exp] 337 / 1e-117 AT4G17260 372 / 1e-130 Lactate/malate dehydrogenase family protein (.1) Potri.004G054200 [exp] 61 / 2e-10 AT1G53240 520 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Potri.011G096300 [exp] 55 / 1e-08 AT3G15020 541 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Potri.017G152000 [exp] 52 / 9e-08 AT1G53240 277 / 8e-93 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004350 [exp] 476 / 5e-171 AT4G17260 550 / 0.0 Lactate/malate dehydrogenase family protein (.1) Lus10002982 [exp] 199 / 7e-65 AT4G17260 198 / 6e-64 Lactate/malate dehydrogenase family protein (.1) Lus10006030 [exp] 121 / 1e-31 AT4G17260 124 / 9e-32 Lactate/malate dehydrogenase family protein (.1) Lus10002983 [exp] 83 / 2e-19 AT4G17260 159 / 3e-48 Lactate/malate dehydrogenase family protein (.1) Lus10028931 [exp] 63 / 3e-12 AT4G17260 88 / 1e-21 Lactate/malate dehydrogenase family protein (.1) Lus10013680 [exp] 62 / 7e-11 AT1G53240 520 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Lus10017939 [exp] 62 / 9e-11 AT1G53240 578 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Lus10038323 [exp] 59 / 6e-10 AT3G15020 578 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Lus10021666 [exp] 57 / 3e-09 AT3G47520 542 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10000275 [exp] 57 / 5e-09 AT3G47520 543 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00056 [poplar] [flax] Ldh_1_N lactate/malate dehydrogenase, NAD binding domain CL0341 [poplar] [flax] LDH_C PF02866 [poplar] [flax] Ldh_1_C lactate/malate dehydrogenase, alpha/beta C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.003G111201.1 pacid=42785859 polypeptide=Potri.003G111201.1.p locus=Potri.003G111201 ID=Potri.003G111201.1.v4.1 annot-version=v4.1 ATGCTTGATCTCCAACACGCTGCAGCTTTTTTACCCCGCACCAAAATTATTGCGTCCACTGATTACCTCGTCACTGTTGGATCTGATCTTTGTATTGTTA CTGCTGGGGCTCGACAGATTGCGGGGGAGTCTAGGTTGAATTTGTTGCAGAGGAATGTTGCTTTGTTTCGGGGAATTATACCTCCGCTTGCTAAGTATTC TCCCGGCACGATCTTGATGATTGTGTCGAATCCTGTTGATGTGTTGACTTATGTGGCGTGGAAGTTGTCGGGGTTTCCTTCGAATCGAGTTGTTGGATCT GGTACGAATCTGGATAGTTCCAGGTTTCGGTTCTTGATTGCTGATCACCTTGATGTCAATGCCCAGGATGTGCAGGCCTCCATTATTGGCGAGCACGGGG ATAGTTCTGTGGCATTATGGTCCAGCATAAGTGTTGGGGGAGTGCCCGTATTGAGCTTCTTAGAGAAGCAGCAAATTCCATATGAGAAGGAGACACTAGA GGGGATTCACAAAGCAGTTGTAGACAGTGCGTATGAAGTGATTAGTCTCAAGGGTTACACATCTTGGGCGATCGGGTACTCAGCTGCTAACTTGGCTCGG TCCATACTCAGAGACCAGAGGAAAATCCACCCCGTTTCAGTTCTTGCAAAGGGGTTTTATGGCATTGATGATGGCGATGTGTTCTTGAGCTTACCTGCAC AGTTAGGTAGGGGAGGGGTTTTAGGGGTGACCAATGTGCATTTGACGGATGAGGAGGCACAAAGGCTTAGGAAGTCTGCTCAGACCATCTTGAAGGTGCA AAGCCAGTTGGGACTTTGA
AA sequence Show only first row Show all	>Potri.003G111201.1 pacid=42785859 polypeptide=Potri.003G111201.1.p locus=Potri.003G111201 ID=Potri.003G111201.1.v4.1 annot-version=v4.1 MLDLQHAAAFLPRTKIIASTDYLVTVGSDLCIVTAGARQIAGESRLNLLQRNVALFRGIIPPLAKYSPGTILMIVSNPVDVLTYVAWKLSGFPSNRVVGS GTNLDSSRFRFLIADHLDVNAQDVQASIIGEHGDSSVALWSSISVGGVPVLSFLEKQQIPYEKETLEGIHKAVVDSAYEVISLKGYTSWAIGYSAANLAR SILRDQRKIHPVSVLAKGFYGIDDGDVFLSLPAQLGRGGVLGVTNVHLTDEEAQRLRKSAQTILKVQSQLGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17260			Lactate/malate dehydrogenase f...		Potri.003G111201 [exp]	0	1
AT4G17260			Lactate/malate dehydrogenase f...		Potri.008G135920 [exp]	2.00	0.9361
AT3G21680			unknown protein		Potri.014G153200 [exp]	9.32	0.7871
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.015G003100 [exp]	12.24	0.8348	COMT1,Pt-OMT1.2
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Potri.004G157900 [exp]	12.64	0.8542
AT5G39850			Ribosomal protein S4 (.1)		Potri.006G209900 [exp]	17.08	0.8601
AT5G37830		OXP1	oxoprolinase 1 (.1)		Potri.017G124400 [exp]	25.25	0.8154
AT2G17070			Arabidopsis protein of unknown...		Potri.009G142500 [exp]	27.62	0.7782
AT1G16780		AtVHP2;2, AVPL1	Inorganic H pyrophosphatase fa...		Potri.008G003502 [exp]	30.78	0.8393
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Potri.007G061540 [exp]	31.74	0.8001
AT5G35770		SAP	STERILE APETALA, Transducin/WD...		Potri.014G166400 [exp]	35.32	0.8037	SAP.1

Compare expression of checked genes

Potri.003G111201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.