Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PPNRT1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12110 721 / 0 CHL1-1, CHL1, B-1, ATNRT1, NRT1.1 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) AT2G26690 553 / 0 Major facilitator superfamily protein (.1) AT3G21670 490 / 6e-168 Major facilitator superfamily protein (.1) AT3G54140 457 / 4e-155 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 452 / 2e-153 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02040 416 / 5e-139 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G68570 416 / 5e-139 Major facilitator superfamily protein (.1) AT1G59740 390 / 8e-129 Major facilitator superfamily protein (.1) AT1G62200 384 / 2e-126 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT5G46050 374 / 7e-123 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G225500 [exp] 508 / 7e-175 AT3G21670 736 / 0.0 Major facilitator superfamily protein (.1) Potri.014G157500 [exp] 496 / 2e-170 AT3G21670 772 / 0.0 Major facilitator superfamily protein (.1) Potri.016G111900 [exp] 462 / 2e-157 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 460 / 2e-156 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111800 [exp] 456 / 8e-155 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.009G042400 [exp] 455 / 2e-154 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 452 / 2e-153 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.010G100200 [exp] 452 / 3e-153 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.011G120000 [exp] 431 / 9e-145 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032252 [exp] 869 / 0 AT1G12110 771 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Lus10024614 [exp] 827 / 0 AT1G12110 737 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Lus10039782 [exp] 545 / 0 AT2G26690 851 / 0.0 Major facilitator superfamily protein (.1) Lus10018553 [exp] 537 / 0 AT2G26690 852 / 0.0 Major facilitator superfamily protein (.1) Lus10030081 [exp] 512 / 5e-176 AT2G26690 788 / 0.0 Major facilitator superfamily protein (.1) Lus10030006 [exp] 490 / 3e-168 AT3G21670 800 / 0.0 Major facilitator superfamily protein (.1) Lus10035317 [exp] 488 / 2e-167 AT3G21670 801 / 0.0 Major facilitator superfamily protein (.1) Lus10035516 [exp] 470 / 3e-160 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10030947 [exp] 449 / 5e-152 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040099 [exp] 446 / 9e-151 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.003G111500.1 pacid=42786972 polypeptide=Potri.003G111500.1.p locus=Potri.003G111500 ID=Potri.003G111500.1.v4.1 annot-version=v4.1 ATGTCTCTTCCAGAAACACAAGGCAAGACCCTCCCAGATGCCTGGGACTGTAAGGGCCGCCCTGCGGAGCGGTCCAAAACTGGTGGCTGGACCAGTGCTG CCATGATTCTAGGTGGAGAGGCAATGGAGAGACTAACAACACTTGGTATTGCTGTTAATCTGGTGACGTATCTGACTGGTACTATGCATCTGGGCAATGC TACCTCTGCCAACACTGTCACCAACTTCCTTGGAACATCTTTCATGCTTTGTCTGCTTGGTGGTTTTATTGCTGACACCTTTCTTGGAAGGTATCTCACC ATCGCCATCTTCGCCACCGTGCAAGCAACGGGTGTCACAATCTTGACAATCTCCACCGTAGTCCCAAGCCTCAGGCCACCAAAATGTGTGGACAACACAG ATTGCATCCCTGCGAACGGAGAACAACTCACGGTTCTTTATTTGGCCCTGTACCTCACTGCCCTCGGCACTGGAGGTCTAAAATCAAGCGTCTCAGGATT TGGCTCCGATCAATTCGATGACACGGACCCAAAAGAACGAAAACAGATGCTCAATTTCTTTAACTGGTTCTTCTTTCTAATCAGCCTAGGTGCACTTTGT GCAGTGACAGTTCTGGTTTACATACAAGATAATTTGGGGAGAGAATGGGGATATGGCATATGTGCCTGTGCTATTGTGCTAGGCCTAATTGTGTTCCTTT CTGGCACAAGGCGGTACCGGTTCAGGAAATTGGTGGGTAGTCCATTGACACAGATAGCCACTGTTTTTGTGAGTGCTTGGAGAAAAAGGCACATGGAATT ACCTTCAGATGTGTCTCTTCTTTACAACGTTGATGATGTTGAAGAGGGAAGCAAGGAGAAGAAGCAAAAGCTGCCACATACCAAGCAATTCCGTTTCCTG GACAAAGCAGCGATCAAGGGCCTAGAAGTGGGCAAGGTAAACAAGTGGAATTTAGCAAACTTAACAGATGTTGAAGAAGTGAAAATGGTAATTAGAATGT TGCCCATCTGGGCTACTACTGTGATATTTTGGACTGTCTATGCCCAAATGACCACATTTTCTGTGTCACAAGCCACCACCATGGACCGTCGCATTGGAAA ATCTTTCCAAATACCTGCAGCATCACTGACGGTCTTCTTTGTTGGTAGCATTCTTTTGACTGTTCCTGTTTATGACCGAATTATCGTCCCAGTTGCCAGA AGAGTGCTTAAGCATCCACAAGGGCTAACCCCATTAAGACGCATAGGAGTCGGCTTGGTTTTATCCATTGTTGCCATGATAGCAGCAGCACTCACTGAAA AGAAGAGGCTGAGAGCCGCGAGATTACATGGTTTGGCTAATGATCCAACGGCCGAGATCCCACTGAGTGTGTTCTGGCTGGTCCCACAATTCTTTTTTGT GGGGTCTGGTGAAGCTTTCACATATATAGGGCAGCTTGATTTCTTCCTGAGAGAGTGTCCAAAGGGGATGAAGACGATGAGCACAGGGCTGTTTCTGAGC ACCCTTTCTCTAGGGTTCTTTGTCAGCTCTTCATTGGTTACTATAGTGCACAAGGTGACTATAAACAAGCCATGGTTAGCGGATAATCTAAACCAAGGGA GGCTCCATGATTTCTACTGGTTGTTGGCAATTTTGAGTGCTTTGAACTTTGTCATATATTTGATTTGTGCCAGATGGTATGTCTACAAGGACAAGAGGCT CGCCGACGAGGGAATTGAACTGGACGAAGTTGATGAGCCCACTTTCCACTGA
AA sequence Show only first row Show all	>Potri.003G111500.1 pacid=42786972 polypeptide=Potri.003G111500.1.p locus=Potri.003G111500 ID=Potri.003G111500.1.v4.1 annot-version=v4.1 MSLPETQGKTLPDAWDCKGRPAERSKTGGWTSAAMILGGEAMERLTTLGIAVNLVTYLTGTMHLGNATSANTVTNFLGTSFMLCLLGGFIADTFLGRYLT IAIFATVQATGVTILTISTVVPSLRPPKCVDNTDCIPANGEQLTVLYLALYLTALGTGGLKSSVSGFGSDQFDDTDPKERKQMLNFFNWFFFLISLGALC AVTVLVYIQDNLGREWGYGICACAIVLGLIVFLSGTRRYRFRKLVGSPLTQIATVFVSAWRKRHMELPSDVSLLYNVDDVEEGSKEKKQKLPHTKQFRFL DKAAIKGLEVGKVNKWNLANLTDVEEVKMVIRMLPIWATTVIFWTVYAQMTTFSVSQATTMDRRIGKSFQIPAASLTVFFVGSILLTVPVYDRIIVPVAR RVLKHPQGLTPLRRIGVGLVLSIVAMIAAALTEKKRLRAARLHGLANDPTAEIPLSVFWLVPQFFFVGSGEAFTYIGQLDFFLRECPKGMKTMSTGLFLS TLSLGFFVSSSLVTIVHKVTINKPWLADNLNQGRLHDFYWLLAILSALNFVIYLICARWYVYKDKRLADEGIELDEVDEPTFH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12110		CHL1-1, CHL1, B...	CHLORINA 1, ARABIDOPSIS THALIA...		Potri.003G111500 [exp]	0	1	Pt-PPNRT1.2
AT1G16210			unknown protein		Potri.009G140200 [exp]	6.48	0.6828
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Potri.001G140000 [exp]	6.48	0.6709
AT5G27930			Protein phosphatase 2C family ...		Potri.013G012200 [exp]	15.00	0.6572
					Potri.012G074300 [exp]	18.65	0.6935
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.013G143900 [exp]	29.18	0.6753	FGT1
AT2G21600		ATRER1B	endoplasmatic reticulum retrie...		Potri.005G228900 [exp]	33.88	0.6435	RER1.4
AT2G06530		VPS2.1	SNF7 family protein (.1)		Potri.001G170400 [exp]	40.98	0.6428
AT2G28200	C2H2ZnF		C2H2-type zinc finger family p...		Potri.004G216900 [exp]	47.69	0.5904
AT4G15800		RALFL33	ralf-like 33 (.1)		Potri.005G025800 [exp]	49.29	0.6385	RALFL23.2
AT4G19450			Major facilitator superfamily ...		Potri.001G128200 [exp]	49.93	0.6073

Compare expression of checked genes

Potri.003G111500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.