Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22540 1100 / 0 ORP2A OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) AT4G12460 1031 / 0 ORP2B OSBP(oxysterol binding protein)-related protein 2B (.1), OSBP(oxysterol binding protein)-related protein 2B (.2) AT4G08180 864 / 0 ORP1C OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) AT2G31020 815 / 0 ORP1A OSBP(oxysterol binding protein)-related protein 1A (.1) AT1G13170 810 / 0 ORP1D OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) AT2G31030 622 / 0 ORP1B OSBP(oxysterol binding protein)-related protein 1B (.1) AT3G09300 187 / 5e-52 ORP3B OSBP(oxysterol binding protein)-related protein 3B (.1) AT5G59420 179 / 5e-49 ORP3C OSBP(oxysterol binding protein)-related protein 3C (.1) AT5G02100 178 / 1e-48 UNE18, ORP3A UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1) AT1G77730 161 / 1e-44 Pleckstrin homology (PH) domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G121700 [exp] 1424 / 0 AT4G22540 1109 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Potri.005G172900 [exp] 867 / 0 AT4G08180 1158 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.002G088000 [exp] 865 / 0 AT4G08180 1144 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.010G051400 [exp] 822 / 0 AT1G13170 1211 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Potri.019G015111 [exp] 799 / 0 AT4G08180 889 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.008G182766 [exp] 278 / 1e-86 AT1G13170 471 / 2e-161 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Potri.006G086400 [exp] 178 / 1e-48 AT3G09300 764 / 0.0 OSBP(oxysterol binding protein)-related protein 3B (.1) Potri.018G143600 [exp] 60 / 4e-09 AT4G25850 412 / 2e-143 OSBP(oxysterol binding protein)-related protein 4B (.1), OSBP(oxysterol binding protein)-related protein 4B (.2) Potri.006G076400 [exp] 56 / 7e-08 AT5G57240 392 / 9e-136 OSBP(oxysterol binding protein)-related protein 4C (.1), OSBP(oxysterol binding protein)-related protein 4C (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024613 [exp] 1158 / 0 AT4G22540 1065 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Lus10032251 [exp] 1075 / 0 AT4G22540 979 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Lus10028087 [exp] 865 / 0 AT4G08180 1147 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10025635 [exp] 852 / 0 AT4G08180 1142 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10036949 [exp] 815 / 0 AT1G13170 1241 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Lus10006237 [exp] 790 / 0 AT1G13170 1219 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Lus10035967 [exp] 652 / 0 AT4G08180 803 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10025695 [exp] 621 / 0 AT4G08180 887 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10024386 [exp] 180 / 3e-49 AT5G02100 771 / 0.0 UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1) Lus10010843 [exp] 177 / 3e-48 AT5G02100 771 / 0.0 UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01237 [poplar] [flax] Oxysterol_BP Oxysterol-binding protein CL0266 [poplar] [flax] PH PF15413 [poplar] [flax] PH_11 Pleckstrin homology domain
Representative CDS sequence Show only first row Show all	>Potri.003G111600.4 pacid=42786517 polypeptide=Potri.003G111600.4.p locus=Potri.003G111600 ID=Potri.003G111600.4.v4.1 annot-version=v4.1 ATGGTTATAAAAATGAGGGTCAAAGAAATGCATCCATTATGCTGCATCTCACTAGAGAGTTCAGAAGTTCGGAGCCAATCACCGGATGCAACGTTGACTC GAGCAAGATCGTTGCCGGAGACATTTTTCGGTGGATCTAACGGCAATGTAGGGAGGACAGAGGCGGGATCGAAGGCGACGGTGGCTGGAGTGTTGTACAA GTGGACGAATTATGGGAAAGGGTGGAGATCGCGGTGGTTCTTGTTGAAAAATGGTGTGCTTTCTTACTCGAAGATTCGACGGCCACCGGAGAGTATTAAT CTGGGTGATGATGTTAGATTGATCGGAGAAATATCGACGAATCGATTATTGAGATTGGATAGTCGTGGCGGCAGTGGAAGACAGAAACTGCAAAAAACTG TTGGCCTTGTTCATTTAAAGATTTCATCATTTCGTGAGAGCAAGTCCGACGATAAGCGGTTTTACATATTTACTGCTACTAAGACACTTCATCTGAGAAC TGATTCAAAGAGAGATAGAGTGGCTTGGATACGAGCACTGGTCTCAACTAGCAGCCTTTTTCCATCAAGATCGCTAAATGATAGTATCTCCCTTGTTCCA AATGATTTGTCTATCTCAACTGACAGGCTTAAGAAACGTTTACTTGAAGACGGTATCAATGAGAACATCGTAAAGGATTGCGAGCAGATAATGCTATCCG AGTTTTCTGAGATACAAGTACAAGTTAAAGTTCTTTGTGAAGAACGGTCCAATTTGCTAGACACATTAAGGCAATTGGAGGCAGCTAATATTGAAAATGA AACCTCAGGAATTCCAGATGGCGAATATCAATTGACAAAGCATGAATTTTCGAGTTTAGGGCGTGGAAAATATAGTGAATATAGCACAACTGAGTCATCT GATGATATTGAGAAACAAGAGCTTGAGGAAGTGTCAGACGAAGATGGAACCTCCTTTTATGACACAAAAGAATATTTTACTGAACTGGCTGTCAGTGGTT TGTCAATGACAGAAGTTTCAAAGTACTCTGAGAAGGATAGGAGATTTAATCAGCTTGATAATGAAGAGAAAATGAATGCTGAGAAGCGAGTTTGCAGTTC TGGATATCCAAATATTGAAAGGCGAAAAAAGCTTCCTGACCCGGTTGAGAAAGAGAAAGGAGTCAGTCTTTGGTCTATGATCAAAGACAATGTGGGGAAG GATCTCACACGAGTCTGTCTCCCTGTTTACTTTAATGAACCAATATCCTCTCTTCAGAAGTGCTTTGAGGACTTGGAGTACTCTTATCTTTTGGACAGAG CCTATGAATATGGAAAAGCAGGGAACAGCGACCTAAGGATCCTAAATGTTGCCGCATTTGCTGTCTCTGGATATGCTTCCTCTGAAGGCCGGCACTGTAA ACCCTTCAATCCTTTGCTAGGAGAAACTTATGAAGCTGACTTTCCTGATAAAGGAGTTCGTTTCTTCTCTGAAAAGGTTAGTCACCACCCAACTCTCATT GCCTGCCACTGTGAAGGTAGAGGGTGGAAGTTCTGGGGTGACAGCAACCTCCGCACAAAATTTTGGGGGCGGTCGATTCAGCTTGACCCTGTTGGAATCC TGACCCTAGAATTTGATGATGGTGAAATATTCCAGTGGAGCAAGGTCACAACAACAATCTATAATCTTATCCTTGGTAAATTGTATTGTGGTCACCATGG GATGATGCATATACAAGGAAATCGACAGTATTCATGCAAACTGAAGTTCAAAGAACAATCTATTCTTGACAGAAATCCTCACCAGGTTCAAGGGTTCGTT GAAGATGCTTCTGGTAACAAAGTTGCTTCATTATTTGGGAAGTGGGATGACAGCATGTATTATACTACTGGGGATGAGACTGGCAAGCCAAAGGATCGGA TTCCCTCATCTAATGCCACCTTGCTTTGGAAAAGGAACAAGCCACCTCTTAATCTCACCCGGTACAACTTGACGACATTTGCTATCACACTAAACGAATT GACGCCAGGACTCCAGGAGAGGCTCCCACCCACGGATTCCAGGCTTAGACCAGACCAGCGGCATTTGGAGAATGGGGAATATGAGAAAGCAAATGCAGAG AAACAACGGCTGGAGAGGAGGCAAAGAATGTCAAGGAAATTACAAGAACATGGATGGAAGCCCAGATGGTTCCAAAAGGAAGGTGATAATGGATCTTTCC GCTATGGGGGTGGCTATTGGGAAGCTCGGGAGCAGGGAAATTGGGATGGATGTCCAAATATTTTTGGTGAATTCAATGAAGACCTAGTGGAATCCTCTGA AGGGCCCTGA
AA sequence Show only first row Show all	>Potri.003G111600.4 pacid=42786517 polypeptide=Potri.003G111600.4.p locus=Potri.003G111600 ID=Potri.003G111600.4.v4.1 annot-version=v4.1 MVIKMRVKEMHPLCCISLESSEVRSQSPDATLTRARSLPETFFGGSNGNVGRTEAGSKATVAGVLYKWTNYGKGWRSRWFLLKNGVLSYSKIRRPPESIN LGDDVRLIGEISTNRLLRLDSRGGSGRQKLQKTVGLVHLKISSFRESKSDDKRFYIFTATKTLHLRTDSKRDRVAWIRALVSTSSLFPSRSLNDSISLVP NDLSISTDRLKKRLLEDGINENIVKDCEQIMLSEFSEIQVQVKVLCEERSNLLDTLRQLEAANIENETSGIPDGEYQLTKHEFSSLGRGKYSEYSTTESS DDIEKQELEEVSDEDGTSFYDTKEYFTELAVSGLSMTEVSKYSEKDRRFNQLDNEEKMNAEKRVCSSGYPNIERRKKLPDPVEKEKGVSLWSMIKDNVGK DLTRVCLPVYFNEPISSLQKCFEDLEYSYLLDRAYEYGKAGNSDLRILNVAAFAVSGYASSEGRHCKPFNPLLGETYEADFPDKGVRFFSEKVSHHPTLI ACHCEGRGWKFWGDSNLRTKFWGRSIQLDPVGILTLEFDDGEIFQWSKVTTTIYNLILGKLYCGHHGMMHIQGNRQYSCKLKFKEQSILDRNPHQVQGFV EDASGNKVASLFGKWDDSMYYTTGDETGKPKDRIPSSNATLLWKRNKPPLNLTRYNLTTFAITLNELTPGLQERLPPTDSRLRPDQRHLENGEYEKANAE KQRLERRQRMSRKLQEHGWKPRWFQKEGDNGSFRYGGGYWEAREQGNWDGCPNIFGEFNEDLVESSEGP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Potri.003G111600 [exp]	0	1
AT3G55640			Mitochondrial substrate carrie...		Potri.008G060900 [exp]	1.41	0.8683
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.010G187401 [exp]	2.44	0.8680
AT4G21780			unknown protein		Potri.011G000400 [exp]	3.00	0.8672
AT3G02880			Leucine-rich repeat protein ki...		Potri.004G066300 [exp]	3.46	0.8586
AT3G47890			Ubiquitin carboxyl-terminal hy...		Potri.017G089250 [exp]	6.92	0.8435
AT5G19840			2-oxoglutarate (2OG) and Fe(II...		Potri.002G047875 [exp]	7.93	0.8237
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.017G012200 [exp]	9.89	0.8299
AT1G61290		ATSYP124, SYP12...	syntaxin of plants 124 (.1)		Potri.011G043700 [exp]	17.88	0.7703
AT1G17810		BETA-TIP	beta-tonoplast intrinsic prote...		Potri.018G152100 [exp]	22.64	0.7690	Pt-BETA-TIP.1
AT3G49550			unknown protein		Potri.012G004900 [exp]	27.82	0.8470

Compare expression of checked genes

Potri.003G111600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.