Plant FIBer expression Database

Potri.003G111700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G22550 94 / 1e-23 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004345
[exp]
118 / 5e-33 AT4G22550 168 / 1e-52 Phosphatidic acid phosphatase (PAP2) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0525 pap2 PF01569 PAP2 PAP2 superfamily
Representative CDS sequence
>Potri.003G111700.4 pacid=42784890 polypeptide=Potri.003G111700.4.p locus=Potri.003G111700 ID=Potri.003G111700.4.v4.1 annot-version=v4.1
ATGGCCGAACCACCACCGACACTCCTCCAAAAAGTCCTGACGGTAGACACAAAATTCTCCCACTACCTCCATTCCAAATTCCACACTCGCCTCCCAATAT
TCTTTCTCCTCATCCTAGAAATTTCCGCTGACTTCCGCTTTTCCTTCCCAATTTCCCTCTCCCTTTTGTTTGCCCTTCCCCTCCCTTCCCTCCTTCCTTT
CTTTTCCTCTCTCCTACTTGGTCTCCTCCTTGATATCGCCACCGTCGGCCTTGTCAAAATCCTCTTGCGCCGCCCTCGCCCTCCTTATAACCACCTCTCC
TCCATGTCCACCCCTGTCTCCGCCGACCACTTTTCCTTCCCTAGTGGCCATTCCTCTCGTGTTTCCTTTGTTGCTGCATTGGTTTTTCTCTATAAGGAGG
TGATGGAGGTAGCGGCTGTGGAGGTGAGGGAAAAAGGTGGAGTCTTTGGAAGTTGGGTGGGGGAAGACGGGAAGTTGGTGGACGTCGTGGTGGTGGGAGT
TTGTGTTTGGGCAGTTGTTACGGCGGTTTCTAGGGTTTTATTAGGGAGGCATTACTTTTTTGATGTCTTCGCAGGGTTTTGTTTGGGAGTGATTGAAGGG
ATTTTCGCCTTTCGGGTTTTGAGGTTTGAGGATATTTTGAGCACCTTTCGTCATCAAATCTGGTCAAGGTAG
AA sequence
>Potri.003G111700.4 pacid=42784890 polypeptide=Potri.003G111700.4.p locus=Potri.003G111700 ID=Potri.003G111700.4.v4.1 annot-version=v4.1
MAEPPPTLLQKVLTVDTKFSHYLHSKFHTRLPIFFLLILEISADFRFSFPISLSLLFALPLPSLLPFFSSLLLGLLLDIATVGLVKILLRRPRPPYNHLS
SMSTPVSADHFSFPSGHSSRVSFVAALVFLYKEVMEVAAVEVREKGGVFGSWVGEDGKLVDVVVVGVCVWAVVTAVSRVLLGRHYFFDVFAGFCLGVIEG
IFAFRVLRFEDILSTFRHQIWSR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G22550 Phosphatidic acid phosphatase ... Potri.003G111700
[exp]
0 1
AT1G54310 S-adenosyl-L-methionine-depend... Potri.010G173800
[exp]
6.85 0.7911
AT4G27610 unknown protein Potri.019G042700
[exp]
6.92 0.7486
Potri.017G119700
[exp]
8.66 0.7656
AT1G05385 Psb27-H1, LPA19 LOW PSII ACCUMULATION 19, phot... Potri.008G152800
[exp]
12.16 0.7674
AT2G25100 Polynucleotidyl transferase, r... Potri.008G019800
[exp]
12.40 0.7593
AT2G37210 LOG3 LONELY GUY 3, lysine decarboxy... Potri.006G127400
[exp]
17.49 0.7729
AT1G17100 SOUL heme-binding family prote... Potri.001G067100
[exp]
31.96 0.7460
AT1G05190 EMB2394 embryo defective 2394, Ribosom... Potri.002G229350
[exp]
32.68 0.7624
AT5G55610 unknown protein Potri.001G366000
[exp]
42.60 0.6756
AT1G28100 unknown protein Potri.003G163800
[exp]
46.43 0.7342

Potri.003G111700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.