Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30590 153 / 1e-43 WRKY WRKY21 WRKY DNA-binding protein 21 (.1) AT2G23320 148 / 2e-42 WRKY WRKY15 WRKY DNA-binding protein 15 (.1.2) AT4G31550 146 / 2e-41 WRKY ATWRKY11, WRKY11 WRKY DNA-binding protein 11 (.1.2) AT5G28650 144 / 8e-41 WRKY ATWRKY74, WRKY74 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) AT2G24570 142 / 3e-40 WRKY ATWRKY17, WRKY17 WRKY DNA-binding protein 17 (.1) AT3G04670 139 / 6e-39 WRKY ATWRKY39, WRKY39 WRKY DNA-binding protein 39 (.1.2) AT4G24240 134 / 1e-36 WRKY ATWRKY7, WRKY7 WRKY DNA-binding protein 7 (.1) AT1G29280 103 / 4e-26 WRKY ATWRKY65, WRKY65 WRKY DNA-binding protein 65 (.1) AT2G34830 101 / 5e-24 WRKY ATWRKY35, WRKY35, MEE24 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) AT1G30650 98 / 6e-23 WRKY ATWRKY14, AR411, WRKY14 WRKY DNA-binding protein 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G121300 [exp] 431 / 5e-153 AT4G31550 145 / 5e-41 WRKY DNA-binding protein 11 (.1.2) Potri.002G043500 [exp] 160 / 2e-46 AT2G30590 345 / 1e-117 WRKY DNA-binding protein 21 (.1) Potri.005G219500 [exp] 155 / 6e-45 AT2G30590 352 / 3e-120 WRKY DNA-binding protein 21 (.1) Potri.013G042600 [exp] 154 / 3e-44 AT3G04670 333 / 1e-113 WRKY DNA-binding protein 39 (.1.2) Potri.007G047400 [exp] 152 / 9e-44 AT4G24240 283 / 4e-94 WRKY DNA-binding protein 7 (.1) Potri.005G141400 [exp] 152 / 1e-43 AT4G24240 236 / 2e-75 WRKY DNA-binding protein 7 (.1) Potri.005G055300 [exp] 152 / 2e-43 AT3G04670 361 / 1e-124 WRKY DNA-binding protein 39 (.1.2) Potri.002G123300 [exp] 151 / 5e-43 AT4G24240 275 / 2e-90 WRKY DNA-binding protein 7 (.1) Potri.014G024200 [exp] 149 / 2e-42 AT4G24240 261 / 8e-85 WRKY DNA-binding protein 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024864 [exp] 159 / 2e-46 AT2G30590 325 / 7e-110 WRKY DNA-binding protein 21 (.1) Lus10018776 [exp] 159 / 3e-46 AT2G30590 322 / 6e-109 WRKY DNA-binding protein 21 (.1) Lus10033857 [exp] 159 / 4e-46 AT3G04670 362 / 3e-124 WRKY DNA-binding protein 39 (.1.2) Lus10014745 [exp] 159 / 7e-46 AT3G04670 362 / 2e-124 WRKY DNA-binding protein 39 (.1.2) Lus10041600 [exp] 150 / 6e-43 AT2G23320 276 / 2e-91 WRKY DNA-binding protein 15 (.1.2) Lus10042538 [exp] 149 / 2e-42 AT5G28650 301 / 7e-102 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) Lus10006261 [exp] 149 / 3e-42 AT2G23320 273 / 2e-90 WRKY DNA-binding protein 15 (.1.2) Lus10021999 [exp] 147 / 1e-41 AT5G28650 297 / 4e-100 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) Lus10026936 [exp] 145 / 7e-41 AT4G31550 409 / 1e-143 WRKY DNA-binding protein 11 (.1.2) Lus10020136 [exp] 140 / 4e-39 AT4G31550 401 / 8e-141 WRKY DNA-binding protein 11 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain CL0274 [poplar] [flax] PF10533 [poplar] [flax] Plant_zn_clust Plant zinc cluster domain
Representative CDS sequence Show only first row Show all	>Potri.003G111900.2 pacid=42785683 polypeptide=Potri.003G111900.2.p locus=Potri.003G111900 ID=Potri.003G111900.2.v4.1 annot-version=v4.1 ATGACTCCAAGATGGGATTTCAAAATTCATGAGGTTGCTCAAAGTAGTTTCAGACATGCTCATAATCTGTTTAGCTGTATTTCTGATAAAAATCAGAAAA GAAGCATCCAGGAAGTAAGCCTGATTGCTCAAGATGCAGTTAATGAATTCAGAAATTTAGTTAGAATCCTTGACGATTCAGAGCAGTCAGATTGTAAGAG GATCAGGAAAGGTCCCTTACCACATGCCCATGACATAAACCCAGTTGAACTGATGGATAGTCCCAACTCTGTGTCTAAAAGTTCTGACCACAACTTTTCT CAACCCAATAGGCAGCTATTCCCTCTACAGAGTATTCTGTCAACTACTTCTTTGACCCATGTCAATACTCTCAACTTGTACAGGGAAAAACAGAAGAAGT CTAAAGACAACGTCGATGTCAAAAATAATTTGATCATGGGGTTGAACCATTCTCCCTTACAGACAAGCGCATATTTTTTAAATTCGGATGGAAGTGGCAG GATATTTCATCATTCATCATCAGAAGGTCTACCTTCTCAAGATGACTCCTCCATATTTTCCAAGAGCAAGAGTGAAGAGACTAGTGCTAAATGCCTTGCC TCAACCGGTGGATGTCACTGCTCAAAGCGAAGGAAATCGAGGATCAAGAAAATTATTAAGGTTCCTGCTTTAAGCACTAAACTAGCTGACATACCTCCCG ATGATCACTCCTGGAGAAAATATGGACAGAAGCCAATAAAAGGATCTCCATATCCCAGGAGCTACTATAAATGCAGCAGCAAGAGGGGATGCCCTGCAAG AAAACATGTAGAAAGGAGCCTGGAGGATCCTACCATGTTAGTTGTGGCTTATGAAGGGGAACACAATCACTCCAAAATTGCATTTCAATCTCCCAACATG ATGCTTCATATTTAA
AA sequence Show only first row Show all	>Potri.003G111900.2 pacid=42785683 polypeptide=Potri.003G111900.2.p locus=Potri.003G111900 ID=Potri.003G111900.2.v4.1 annot-version=v4.1 MTPRWDFKIHEVAQSSFRHAHNLFSCISDKNQKRSIQEVSLIAQDAVNEFRNLVRILDDSEQSDCKRIRKGPLPHAHDINPVELMDSPNSVSKSSDHNFS QPNRQLFPLQSILSTTSLTHVNTLNLYREKQKKSKDNVDVKNNLIMGLNHSPLQTSAYFLNSDGSGRIFHHSSSEGLPSQDDSSIFSKSKSEETSAKCLA STGGCHCSKRRKSRIKKIIKVPALSTKLADIPPDDHSWRKYGQKPIKGSPYPRSYYKCSSKRGCPARKHVERSLEDPTMLVVAYEGEHNHSKIAFQSPNM MLHI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30590	WRKY	WRKY21	WRKY DNA-binding protein 21 (....		Potri.003G111900 [exp]	0	1
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Potri.002G028200 [exp]	1.00	0.9394	Pt-COL6.2
AT4G23050			PAS domain-containing protein ...		Potri.003G122700 [exp]	1.41	0.9365
AT1G25530			Transmembrane amino acid trans...		Potri.008G118000 [exp]	3.46	0.9296
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Potri.005G234500 [exp]	4.47	0.9132	Pt-COL6.1
AT4G23340			2-oxoglutarate (2OG) and Fe(II...		Potri.003G128100 [exp]	6.32	0.8793	2OGox5
AT5G23160			unknown protein		Potri.013G149300 [exp]	6.92	0.8885
AT1G22990		HIPP22	heavy metal associated isopren...		Potri.010G114600 [exp]	7.00	0.8487
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Potri.014G128000 [exp]	7.48	0.9005
AT4G24050			NAD(P)-binding Rossmann-fold s...		Potri.001G086900 [exp]	9.21	0.9116
AT2G02220		ATPSKR1	phytosulfokin receptor 1 (.1)		Potri.010G097700 [exp]	12.00	0.8974	PSKR.1

Compare expression of checked genes

Potri.003G111900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.