Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62530 108 / 7e-26 Plant protein of unknown function (DUF863) (.1), Plant protein of unknown function (DUF863) (.2) AT1G12120 104 / 2e-23 Plant protein of unknown function (DUF863) (.1) AT1G69360 58 / 3e-08 Plant protein of unknown function (DUF863) (.1) AT1G26620 56 / 1e-07 Plant protein of unknown function (DUF863) (.1) AT5G61300 53 / 7e-07 unknown protein AT1G13940 50 / 4e-06 Plant protein of unknown function (DUF863) (.1) AT5G67390 43 / 0.0002 unknown protein AT5G07790 44 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G121200 [exp] 1088 / 0 AT1G62530 106 / 5e-25 Plant protein of unknown function (DUF863) (.1), Plant protein of unknown function (DUF863) (.2) Potri.008G092800 [exp] 52 / 1e-06 AT1G13940 459 / 2e-144 Plant protein of unknown function (DUF863) (.1) Potri.010G162000 [exp] 51 / 3e-06 AT1G13940 437 / 2e-136 Plant protein of unknown function (DUF863) (.1) Potri.007G053300 [exp] 47 / 1e-05 AT5G67390 100 / 3e-26 unknown protein Potri.004G125900 [exp] 47 / 4e-05 AT1G69360 149 / 2e-36 Plant protein of unknown function (DUF863) (.1) Potri.017G088900 [exp] 46 / 9e-05 AT1G69360 152 / 2e-37 Plant protein of unknown function (DUF863) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024611 [exp] 137 / 7e-34 AT1G12120 97 / 6e-22 Plant protein of unknown function (DUF863) (.1) Lus10037122 [exp] 54 / 3e-07 AT1G69360 257 / 8e-74 Plant protein of unknown function (DUF863) (.1) Lus10036807 [exp] 54 / 4e-07 AT1G69360 254 / 9e-73 Plant protein of unknown function (DUF863) (.1) Lus10030419 [exp] 49 / 2e-05 AT1G13940 397 / 1e-121 Plant protein of unknown function (DUF863) (.1) Lus10026640 [exp] 48 / 3e-05 AT1G13940 323 / 7e-96 Plant protein of unknown function (DUF863) (.1) Lus10011080 [exp] 45 / 6e-05 AT5G67390 91 / 7e-23 unknown protein Lus10011531 [exp] 44 / 0.0002 AT5G67390 97 / 3e-25 unknown protein Lus10019291 [exp] 44 / 0.0002 AT5G67390 95 / 2e-24 unknown protein Lus10021644 [exp] 45 / 0.0003 AT1G13940 105 / 5e-23 Plant protein of unknown function (DUF863) (.1) Lus10034722 [exp] 44 / 0.0006 AT1G13940 106 / 3e-23 Plant protein of unknown function (DUF863) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05904 [poplar] [flax] DUF863 Plant protein of unknown function (DUF863)
Representative CDS sequence Show only first row Show all	>Potri.003G112000.6 pacid=42784563 polypeptide=Potri.003G112000.6.p locus=Potri.003G112000 ID=Potri.003G112000.6.v4.1 annot-version=v4.1 ATGGACTTGTTCAATCCTAGCAAGGAGATGTTGATGCAAGGAGATTTAGATCTGAACTCTGTACAGCTATACACAGATTCATTTAAAGAAGTTATAAAGA AGACAATTCTCAAGCAGGAGGTTATATTTAGGACTCAGGTCCATGAACTCCATCAGTTATATAGGACACAGAAGTCACTAATGAAGAATCTTGGTTGTAA GGGGTGTGGTGCATACAATTCATGGGATGCAAATGTGCAATCATTTTTACCACCATTTACAAATCCTACAAGAGTTGAACCGCTGGTGAAAGAAACAGGA ATTTCCTCATTTTCCAAGGTGTTCTCAACACCTTCCACAAGCGAGGAGTTGTTAGATGGGTGCCAAGATGCATATTATAGGCTTAAGCAGAGGCCTCTTG ATCTTCAGCTCTCTGCTGATGAATTCATCAGCCATGTCGAGGAGGATCTCCCAAGCATAGGACATGCTTGGAATCATCGCTTAAGAGAACCCATAGACTT TAAGCATCCTCTCTCTTCTAATTACTCTTCAGGTACTGAGGAGTTGAAGCTTTCCCTGACCACTGGAGTTGACTATAGAAGAACAGAAGGTGCATTGAGG ACTTGGTTTGATAAGAAAACTCATCAGTACTGTTCTGTGATTGATTTGGAATCAGATGAGATGATATCAGATGATCATGCAAAATGCACACCTTCTGTTG GCGGTGCTGCTCCAGAAACTTATTCCCCAGGCAAGCACAAGTCACTAGTTTCTGCCTTCTCCAATTTAATCTTCTCAACTAGAGCAAAGAAAGATCCATC TGTTGAGATTGCAGAAAGCAGCTCTTTTCAAGAACATAGTGAATGCTGCCGAGAGCAGACCTCTTCGAATGAAGGAATTATGGAGTTACATGATGATATC CTGTTTAATAATCTTTCCACCAAAATTCAACAGTCCACTTCACATCTAAAAGCTGATTTGGACCTCAACAAAGTTTGCCTCGATGACCCGTCATGTTTCT CAAATGATCCTCTATTGGCCTATCCTTCACCGGCCAGCTCAGCAGGTGTATCTGCAGTAGTTATTGGGAGCGTGCAGGAAGAAACTTGCCCAACCACTTC TTGGGAGAAACGAGTCAATGGCTGCTCAAATGAAATTTCTGATATCCTTCATGCTGCTCAAGTAGATTTAAACAGCACAACTAGGAGCGCAAATGTTTGG ACTAGAAGTTCCGACCATAATGGAATAAGCGGTAGGGTAGTGAACCTTACAGGGCCAGAGCCCATGGCCAGCTCCCCAGTAGACATTTTTGTAGACATTG GCAGCTGCAGTGGCGACCTTAAGAATGATAATGTTGTGCTGAAGGCGAAACTTGCAAATGGTCTTCTACATGATTTAAATCAAATGCGTTTAGCTGCTAT AGAACTGACCTCTGAGAAGAGCCAAGTGGAAGACGCTGTCTTTTCATGTGTATATCAGTCTCAAAATGATAGACATGGAAATCAATCTCCTGTTTCATGC AAGTCTGGCATTTATGATAATGATTCAAACAGTGGAAAGACAGCGCAATGTGGCAATGTGTCTGGTGATGTGAACACTGATTTGAAAAGCCACTTAGGGG CACAAGTTGCTGATGCCTCATCAGATGAGAATGACCTAAGAACTTCCAACAGTTGTGATTTGAAAAATGAATGCTACCACAAGAAAGAAGAATCAGCCAA AGTGGATGGTTTGATGAAAAGAGCAGCTGAATCACTTATAAATTTGTCTTTGGAGAATTCAGTTTCCTATCAAGATTCGTCTGCCAAAGAAATCAGAAAT GAGACTAGAGAGGAGCCCCAGTATACTTGTGATTCTTTTGAATTAATAGTTGTGGATCTAACGGAGAGCAATGTGGATGAAAATTCCGTGACATCAAAGC CATATGAAGTAAATGATGTGGAGACAAAAGATTTTGGCTCAAAGTTGAGACGGGGAAGGAGAATGAAAGATTTCCAGAAGGAGATACTGCCTGCTCTGGC ATCTCTTTCAAGACATGAAATTCATGAAGATTTAAACATTATTGAGGGAGTTTTAAGATCAAGAGAATACCGCAAAATCAGCGGCAAGATGGCAAGAAAT GGAGAGAACTGGTCTCCACCGTTGAGAAGTAGACGGTCAAGACTCAATTATGCTGGACGGAGAAATTGTTCATCGAGGTTCAAGTAG
AA sequence Show only first row Show all	>Potri.003G112000.6 pacid=42784563 polypeptide=Potri.003G112000.6.p locus=Potri.003G112000 ID=Potri.003G112000.6.v4.1 annot-version=v4.1 MDLFNPSKEMLMQGDLDLNSVQLYTDSFKEVIKKTILKQEVIFRTQVHELHQLYRTQKSLMKNLGCKGCGAYNSWDANVQSFLPPFTNPTRVEPLVKETG ISSFSKVFSTPSTSEELLDGCQDAYYRLKQRPLDLQLSADEFISHVEEDLPSIGHAWNHRLREPIDFKHPLSSNYSSGTEELKLSLTTGVDYRRTEGALR TWFDKKTHQYCSVIDLESDEMISDDHAKCTPSVGGAAPETYSPGKHKSLVSAFSNLIFSTRAKKDPSVEIAESSSFQEHSECCREQTSSNEGIMELHDDI LFNNLSTKIQQSTSHLKADLDLNKVCLDDPSCFSNDPLLAYPSPASSAGVSAVVIGSVQEETCPTTSWEKRVNGCSNEISDILHAAQVDLNSTTRSANVW TRSSDHNGISGRVVNLTGPEPMASSPVDIFVDIGSCSGDLKNDNVVLKAKLANGLLHDLNQMRLAAIELTSEKSQVEDAVFSCVYQSQNDRHGNQSPVSC KSGIYDNDSNSGKTAQCGNVSGDVNTDLKSHLGAQVADASSDENDLRTSNSCDLKNECYHKKEESAKVDGLMKRAAESLINLSLENSVSYQDSSAKEIRN ETREEPQYTCDSFELIVVDLTESNVDENSVTSKPYEVNDVETKDFGSKLRRGRRMKDFQKEILPALASLSRHEIHEDLNIIEGVLRSREYRKISGKMARN GENWSPPLRSRRSRLNYAGRRNCSSRFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G62530			Plant protein of unknown funct...		Potri.003G112000 [exp]	0	1
AT1G08390			unknown protein		Potri.002G256001 [exp]	3.74	0.8059
AT3G01930			Major facilitator superfamily ...		Potri.017G064201 [exp]	4.47	0.8284
AT5G05800			unknown protein		Potri.001G299100 [exp]	26.49	0.7908
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Potri.007G012700 [exp]	27.87	0.7746
AT4G39110			Malectin/receptor-like protein...		Potri.009G120400 [exp]	30.98	0.7505
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Potri.011G059101 [exp]	31.78	0.7656
AT2G40980			Protein kinase superfamily pro...		Potri.008G083300 [exp]	40.00	0.7335
AT5G54010			UDP-Glycosyltransferase superf...		Potri.017G041900 [exp]	43.16	0.7658
AT2G41550			Rho termination factor (.1)		Potri.006G046700 [exp]	44.02	0.7064
AT3G14360			alpha/beta-Hydrolases superfam...		Potri.001G161500 [exp]	57.44	0.7065

Compare expression of checked genes

Potri.003G112000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.