Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22580 583 / 0 Exostosin family protein (.1) AT4G13990 283 / 4e-90 Exostosin family protein (.1) AT2G29040 281 / 3e-87 Exostosin family protein (.1) AT2G32750 265 / 3e-83 Exostosin family protein (.1) AT2G31990 264 / 5e-83 Exostosin family protein (.1) AT2G20370 266 / 2e-82 AtMUR3, MUR3, KAM1 MURUS 3, KATAMARI 1, Exostosin family protein (.1) AT2G32740 250 / 6e-78 ATGT13 ARABIDOPSIS GALACTOSYLTRANSFERASE 13, galactosyltransferase 13 (.1) AT1G68470 230 / 2e-70 Exostosin family protein (.1) AT5G41250 233 / 3e-70 Exostosin family protein (.1) AT1G63450 233 / 2e-69 RHS8 root hair specific 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G120800 [exp] 803 / 0 AT4G22580 593 / 0.0 Exostosin family protein (.1) Potri.014G147800 [exp] 278 / 6e-88 AT4G13990 534 / 0.0 Exostosin family protein (.1) Potri.009G032500 [exp] 279 / 7e-87 AT2G29040 588 / 0.0 Exostosin family protein (.1) Potri.001G321000 [exp] 265 / 5e-83 AT4G13990 660 / 0.0 Exostosin family protein (.1) Potri.002G256200 [exp] 261 / 1e-80 AT2G20370 964 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Potri.001G105300 [exp] 237 / 1e-71 AT1G63450 653 / 0.0 root hair specific 8 (.1) Potri.012G130700 [exp] 231 / 3e-70 AT5G62220 626 / 0.0 glycosyltransferase 18 (.1) Potri.015G132600 [exp] 228 / 6e-69 AT5G62220 619 / 0.0 glycosyltransferase 18 (.1) Potri.001G382200 [exp] 224 / 9e-68 AT1G68470 530 / 0.0 Exostosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028924 [exp] 662 / 0 AT4G22580 575 / 0.0 Exostosin family protein (.1) Lus10004341 [exp] 658 / 0 AT4G22580 567 / 0.0 Exostosin family protein (.1) Lus10006694 [exp] 280 / 2e-88 AT4G13990 617 / 0.0 Exostosin family protein (.1) Lus10016532 [exp] 278 / 8e-88 AT2G29040 546 / 0.0 Exostosin family protein (.1) Lus10010677 [exp] 271 / 2e-85 AT2G32750 497 / 7e-173 Exostosin family protein (.1) Lus10007426 [exp] 269 / 8e-85 AT2G32750 505 / 5e-176 Exostosin family protein (.1) Lus10024961 [exp] 269 / 1e-83 AT2G20370 959 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10004967 [exp] 268 / 3e-83 AT2G29040 573 / 0.0 Exostosin family protein (.1) Lus10001028 [exp] 265 / 3e-83 AT4G13990 499 / 1e-173 Exostosin family protein (.1) Lus10022862 [exp] 265 / 5e-82 AT2G20370 951 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.003G112200.2 pacid=42786054 polypeptide=Potri.003G112200.2.p locus=Potri.003G112200 ID=Potri.003G112200.2.v4.1 annot-version=v4.1 ATGGCCTGCAAAACCATTTCTTTCTTCTTCTTTTGCTTCCTTTTCATCTCCATTGATTCAATCTCTTCTCAACAATTATCAGACACAGAAACAGATTGCA GTAAGCGTTGGATCCACATCAGACGGTTACCATCAAGGTTCAATCTTGATCTCCTTACAAACTGTTCTGAATACCCACTTTTTGATAACTTCTGTCCTTA CCTAGCAAACCATGGTTTAGGCCCCAAAACACACAATAAGTCTCAATCTTGGTACCGTTCAAACCCATTATTGTTGGAACTTATCTTCCATCGTAGGATG CTTGAATACCCATGTTTAACATCAGATCCCAATCAAGCCAATGCCATTTACTTACCTTACTATGCAGCTATTGATTCTTTGAGATATCTATATGGTCCGG CTGTTAACAACAGCATGGAGCATGGGCTTGAATTGTATGATTATTTGCAAGACAATGAAGGTTGGATATGGTCAAGGAATCATGGGGCTGATCATTTCTT GGTCATGTCAAGGCCTGCTTTGGATTTCTCTCAATCTGTAGATGTTAATCCTCCTATTTGGGGTACTTCGTTTCTTGAATTGCCAGAGTTTTATAATCTC ACTGTTTTGATTGTTGAAGGAAGGGCCTGGCCTTGGCAAGAACAGGCCGTGCCCTATTTGACATCGTTTCATCCCCCAAATTTAGGATTACTTGAGTCTT GGATTAAACGTGTCAAGGCTTCAAAGAGGACCACTCTGTTGCTGTTTGCAGGTGGGGGTGGTGTTGGTTCCTCACCGAATATCAGGAGGAGTATCAGGAA TGAATGTGAAAACAGCAGCTTAAGTGATAGCAGCGACGTTTATGTTAATAATGGTGGAGGGCACGATTACTCCAAGATGAGGAAAGTTTGTGATATAGTG GATTGCTCTAATGGGGTATGTGAGCATGACCCAATAAGGTATATGAGGCCAATGTTACGAGCAACATTTTGTTTGCAGCCTCCAGGGGATACACCAACTA CGAGGTCAACTTTTGATGGGATTATTGCAGGCTGTATACCAGTTTTCTTTGAAGAACTATCCGCAAAGTCACAATATGGATGGCATTTGCCAGAGGAGAT GTATAGAGATTTTGCTGTTTTTATGCCAAAGGAGGATATTGTATTTAAAGGGTTGAGGATTTTGGATGTGTTGATGGGGATACCAAGAGATGAAGTCCGG AGGATGAGGGAGAGAGTTATAGAATTGATACCACGAGTTGTGTACAGGAAGCATGGGAGTTCATTGGATTTAAGAGCTAGAAAGGATGCATTTGACATGG CTGTTGAAGGTGCTTTGCAGAGGATCCATTCTAGGCTAAAAGCAAGGGACTTTGATCAATGA
AA sequence Show only first row Show all	>Potri.003G112200.2 pacid=42786054 polypeptide=Potri.003G112200.2.p locus=Potri.003G112200 ID=Potri.003G112200.2.v4.1 annot-version=v4.1 MACKTISFFFFCFLFISIDSISSQQLSDTETDCSKRWIHIRRLPSRFNLDLLTNCSEYPLFDNFCPYLANHGLGPKTHNKSQSWYRSNPLLLELIFHRRM LEYPCLTSDPNQANAIYLPYYAAIDSLRYLYGPAVNNSMEHGLELYDYLQDNEGWIWSRNHGADHFLVMSRPALDFSQSVDVNPPIWGTSFLELPEFYNL TVLIVEGRAWPWQEQAVPYLTSFHPPNLGLLESWIKRVKASKRTTLLLFAGGGGVGSSPNIRRSIRNECENSSLSDSSDVYVNNGGGHDYSKMRKVCDIV DCSNGVCEHDPIRYMRPMLRATFCLQPPGDTPTTRSTFDGIIAGCIPVFFEELSAKSQYGWHLPEEMYRDFAVFMPKEDIVFKGLRILDVLMGIPRDEVR RMRERVIELIPRVVYRKHGSSLDLRARKDAFDMAVEGALQRIHSRLKARDFDQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22580			Exostosin family protein (.1)		Potri.003G112200 [exp]	0	1
AT4G30480		TPR1, AtTPR1	tetratricopeptide repeat 1, Te...		Potri.006G178900 [exp]	27.33	0.7610
AT5G43950			Plant protein of unknown funct...		Potri.014G193100 [exp]	31.30	0.7293
AT1G79510			Uncharacterized conserved prot...		Potri.008G083400 [exp]	48.16	0.7289
AT3G50940			P-loop containing nucleoside t...		Potri.001G392300 [exp]	55.19	0.7340
					Potri.014G187450 [exp]	61.70	0.6119
AT5G27870			Plant invertase/pectin methyle...		Potri.010G010464 [exp]	67.52	0.7317
					Potri.013G017801 [exp]	72.89	0.7254
AT4G36020		CSDP1	cold shock domain protein 1 (....		Potri.007G057100 [exp]	89.26	0.6672
AT1G78770		APC6	anaphase promoting complex 6 (...		Potri.001G389300 [exp]	132.18	0.6759
AT4G09190			F-box and associated interacti...		Potri.005G254500 [exp]	137.77	0.7015

Compare expression of checked genes

Potri.003G112200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.