Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12430 485 / 3e-172 TPPF trehalose-6-phosphate phosphatase F, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G22590 478 / 2e-169 TPPG trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G51460 468 / 4e-165 ATTPPA Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) AT4G39770 369 / 7e-127 TPPH trehalose-6-phosphate phosphatase H, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G35910 368 / 4e-126 TPPD trehalose-6-phosphate phosphatase D, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G10100 367 / 9e-126 TPPI trehalose-6-phosphate phosphatase I, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT2G22190 360 / 2e-123 TPPE trehalose-6-phosphate phosphatase E, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G65140 360 / 5e-123 TPPJ trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT1G78090 351 / 2e-119 ATTPPB Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) AT1G22210 332 / 7e-113 TPPC trehalose-6-phosphate phosphatase C, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G120500 [exp] 641 / 0 AT4G22590 501 / 2e-178 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.015G126900 [exp] 491 / 2e-174 AT5G51460 531 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Potri.012G126100 [exp] 491 / 3e-174 AT5G51460 526 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Potri.005G077200 [exp] 377 / 1e-129 AT5G65140 545 / 0.0 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.007G090900 [exp] 374 / 3e-128 AT5G65140 548 / 0.0 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.002G094500 [exp] 366 / 2e-125 AT5G65140 489 / 3e-174 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.015G020300 [exp] 330 / 2e-111 AT1G78090 333 / 4e-113 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) Potri.012G001000 [exp] 329 / 3e-111 AT1G35910 336 / 4e-114 trehalose-6-phosphate phosphatase D, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.005G166700 [exp] 265 / 8e-87 AT5G65140 362 / 8e-126 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032244 [exp] 533 / 0 AT4G22590 531 / 0.0 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10024607 [exp] 529 / 0 AT4G22590 534 / 0.0 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10031146 [exp] 457 / 4e-161 AT5G51460 517 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10027208 [exp] 450 / 2e-158 AT5G51460 515 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10031723 [exp] 439 / 4e-154 AT5G51460 511 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10038921 [exp] 427 / 3e-148 AT5G51460 488 / 2e-172 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10019666 [exp] 362 / 3e-124 AT5G65140 483 / 9e-173 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10019010 [exp] 309 / 3e-103 AT1G78090 338 / 6e-115 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) Lus10000687 [exp] 309 / 5e-103 AT5G65140 451 / 3e-159 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10039339 [exp] 306 / 4e-102 AT1G78090 339 / 2e-115 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF02358 [poplar] [flax] Trehalose_PPase Trehalose-phosphatase
Representative CDS sequence Show only first row Show all	>Potri.003G112400.3 pacid=42786437 polypeptide=Potri.003G112400.3.p locus=Potri.003G112400 ID=Potri.003G112400.3.v4.1 annot-version=v4.1 ATGGATGTCGAGTCAAATCATTCTTCTCCTGTTCTCGCTGACCCTGCATCGATAAACAGTTCAAGGCTCGGTATCTATTCTAATCTGTTGCCTTACTCAC CACCAGGAGGATCACTCTCCTCTAGCAAGTATAGTAGGAAAAAGCCAGGGAAGCTTGACGAAGTCTGCTCGAGTGGATGGCTGGATGCCATGAAATCTTC ATCACCCCCTCGGAAGAAGCTCTTTAAGGATGGTTCTGACACCGCTTACAGTTCCTGGATGTTCAAGCATCCATCAGCACTCAATTCATTTGAGGAAATT GCAAATTTTGCTAAAAACAAGAAGATAGCAATGTTTCTAGACTATGATGGGACTCTTTCTCCAATTGTAGATGACCCGGATAATGCGTTTATGTCTGATG ATATGCGTTCTATTGTAAAAAACGTTGCGAAGTATTTCCCAACGGCGATTATTAGTGGAAGAAGTCGTGACAAGGTTTATCAGCTGGTAGGACTAACAGA ACTATATTATGCTGGTAGTCATGGGATGGACATTTTGGGCCCTGTAGGAAAAGCTTCAATGTCCAATGATCATCCAAACTATAGTGAATCTACTACTGAC CAACAGGGCAAGGAGGTGAATCTGTTCCAGCCTGCTAGAGAATTTATACCTATGATCGATGAGGTTTTTAGAACCCTTGTCGAGAATACTAAGGGAATCG AGGGTGCAAAAGTCGAGAATCACAAATTTTGTGCCTCTGTGCATTTCCGAAATGTAGATGAGGAGAACTGGCAACCTATTGCACAATGTGTTCAGGATAT TCTAGATAAGTACCCTCGTTTGCGGAGAACTCATGGACGGAAGGTTTTAGAGGTCCGTCCAATGATTGACTGGAATAAAGGGAAGGCAGTTGAATTCCTG CTTGAATCTCTAGGGCTAAGTAACAGAGACGACGTGCTCTCAATTTATATCGGCGATGATCTGTCAGATGAGGATGCGTTCAAGGTGCTCCGGGAGGGGA ATCGAGGTTATGGAATTCTCGTATCATCTAGACCCAAAGAAACCAGTGCAGTTTACTCTCTCAAAGATCCAATTGAGGTGATGAAATTTCTTAACTCCTT GGTGACATGGAAGAAGGTAGAAGAAGGTGGATGCATCCTGAATAACAGGAGGACTATCTGA
AA sequence Show only first row Show all	>Potri.003G112400.3 pacid=42786437 polypeptide=Potri.003G112400.3.p locus=Potri.003G112400 ID=Potri.003G112400.3.v4.1 annot-version=v4.1 MDVESNHSSPVLADPASINSSRLGIYSNLLPYSPPGGSLSSSKYSRKKPGKLDEVCSSGWLDAMKSSSPPRKKLFKDGSDTAYSSWMFKHPSALNSFEEI ANFAKNKKIAMFLDYDGTLSPIVDDPDNAFMSDDMRSIVKNVAKYFPTAIISGRSRDKVYQLVGLTELYYAGSHGMDILGPVGKASMSNDHPNYSESTTD QQGKEVNLFQPAREFIPMIDEVFRTLVENTKGIEGAKVENHKFCASVHFRNVDEENWQPIAQCVQDILDKYPRLRRTHGRKVLEVRPMIDWNKGKAVEFL LESLGLSNRDDVLSIYIGDDLSDEDAFKVLREGNRGYGILVSSRPKETSAVYSLKDPIEVMKFLNSLVTWKKVEEGGCILNNRRTI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12430		TPPF	trehalose-6-phosphate phosphat...		Potri.003G112400 [exp]	0	1
AT4G12432		CPuORF26	conserved peptide upstream ope...		Potri.003G112350 [exp]	1.00	0.9531
AT5G43580		UPI	UNUSUAL SERINE PROTEASE INHIBI...		Potri.005G221000 [exp]	11.61	0.8659
AT2G30210		LAC3	laccase 3 (.1)		Potri.013G152700 [exp]	15.00	0.8729
AT2G39200		ATMLO12, MLO12	MILDEW RESISTANCE LOCUS O 12, ...		Potri.011G059200 [exp]	16.30	0.8363
AT2G01170		BAT1	bidirectional amino acid trans...		Potri.002G078501 [exp]	17.60	0.8785
AT2G36290			alpha/beta-Hydrolases superfam...		Potri.008G021200 [exp]	21.16	0.8361
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Potri.010G220200 [exp]	23.66	0.8684
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.011G130850 [exp]	23.91	0.8391
AT4G32140			EamA-like transporter family (...		Potri.006G266400 [exp]	26.49	0.7900
AT4G35160			O-methyltransferase family pro...		Potri.004G050500 [exp]	30.62	0.8527	FOMT1,OOMT2.17

Compare expression of checked genes

Potri.003G112400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.