Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	INVA.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12240 882 / 0 ATBETAFRUCT4, VAC-INV VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) AT1G62660 880 / 0 Glycosyl hydrolases family 32 protein (.1) AT3G13790 497 / 1e-169 ATCWINV1, ATBFRUCT1 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) AT3G52600 467 / 7e-158 ATCWINV2 cell wall invertase 2 (.1.2) AT1G55120 464 / 2e-156 ATFRUCT5, ATCWINV3 6-fructan exohydrolase, beta-fructofuranosidase 5 (.1.2.3) AT2G36190 462 / 8e-156 ATCWINV4 cell wall invertase 4 (.1) AT5G11920 451 / 3e-152 ATCWINV6 6-&1-fructan exohydrolase (.1.2) AT3G13784 435 / 1e-145 ATCWINV5 cell wall invertase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G126300 [exp] 1078 / 0 AT1G12240 819 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.015G127100 [exp] 759 / 0 AT1G62660 712 / 0.0 Glycosyl hydrolases family 32 protein (.1) Potri.006G227500 [exp] 512 / 1e-175 AT3G13790 660 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.006G227400 [exp] 500 / 6e-171 AT3G13790 703 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.006G210600 [exp] 495 / 6e-169 AT3G52600 770 / 0.0 cell wall invertase 2 (.1.2) Potri.016G077500 [exp] 492 / 1e-167 AT3G52600 751 / 0.0 cell wall invertase 2 (.1.2) Potri.016G077400 [exp] 491 / 4e-167 AT3G52600 755 / 0.0 cell wall invertase 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028922 [exp] 962 / 0 AT1G12240 832 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10004340 [exp] 949 / 0 AT1G12240 833 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10024605 [exp] 927 / 0 AT1G12240 805 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10032242 [exp] 903 / 0 AT1G62660 800 / 0.0 Glycosyl hydrolases family 32 protein (.1) Lus10004031 [exp] 889 / 0 AT1G12240 783 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10031144 [exp] 757 / 0 AT1G12240 729 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10030278 [exp] 643 / 0 AT1G62660 562 / 0.0 Glycosyl hydrolases family 32 protein (.1) Lus10037633 [exp] 483 / 4e-164 AT3G13790 704 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10014219 [exp] 481 / 6e-163 AT2G36190 711 / 0.0 cell wall invertase 4 (.1) Lus10001529 [exp] 480 / 1e-162 AT3G13790 598 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0143 [poplar] [flax] B_Fructosidase PF00251 [poplar] [flax] Glyco_hydro_32N Glycosyl hydrolases family 32 N-terminal domain CL0004 [poplar] [flax] Concanavalin PF08244 [poplar] [flax] Glyco_hydro_32C Glycosyl hydrolases family 32 C terminal CL0004 [poplar] [flax] PF11837 [poplar] [flax] DUF3357 Domain of unknown function (DUF3357)
Representative CDS sequence Show only first row Show all	>Potri.003G112600.1 pacid=42786096 polypeptide=Potri.003G112600.1.p locus=Potri.003G112600 ID=Potri.003G112600.1.v4.1 annot-version=v4.1 ATGGCGGACCCAAGTCCATTGCTTCCAGTTTCCAATTCCTTAGAACCCAGCTATAGTCCTGCCCCAGAAGGGGCCGTCTCAGCCGGATGTCCGGCGACCC ATCTCCGACGATCCAAGAAAGTACTCATCGCGGTCTTCTCTGGGTTGCTTGTTGTTTCTTTGATTTTAGCTACAATTAATAATAACAATGGAGGTCGACA TGTCCAATATCATTCACAAGAAGACGAAGATGCGTCCTTGGCTACGCCAAAAGAAATGGCGAAACCCGAGACTTTGTTGCCAGCAGGATATTCACGTGGG GTATCTGCCGGTGTGTCAGAGAAGGCCAACGTGAATTTGAAGGGAGCTCAGGTGAAAGATTATCCGTGGAACAATAGCATGTTATCATGGCAAAGAACTG CTTTCCATTTTCAACCTGAAGAGAATTGGATGAACGATCCCAACGGTCCATTGTATTACAAAGGCTGGTACCACTTCTTCTACCAATACAATCCACATGC TGCCGTGTGGGGCGACATAGTCTGGGGCCATGCTGTATCAAAAGACTTGATCCATTGGCTCCACCTCCCATTGGCGATGGTTGCCGATAAATGGTACGAC AAGAATGGTGTCTGGACTGGCTCTGCCACAATCCTCCCTGATGGTAAGATCGTCATGCTATACACTGGATCCACTAATGAGTCAGTCCAGGTACAAAATC TTGCATATCCAGCAGACCACGATGATCCTCTCCTCCTCAAGTGGGTCAAATACTCTGGCAATCCTGTTTTAGTCCCGCCACCAGGTATTGGTGCCAAGGA CTTCCGTGACCCCACAACAGCCTGGAAAACTTCTGAAGGGAAGTGGCGCATTATAATAGGATCCAAAATTAATAAAACTGGCATAGCTTTAGTCTATGAT ACTGAAGACTTCATAAATTATGAGTTGTTAAGTGGAATCCTTCACGGTGTCCCTAAAACTGGCATGTGGGAATGTGTGGACTTTTACCCTGTGTCGAAAA CAGGTCAGAATGGATTGGATACATCTGTTAATGGTCCTCAAGTGAAGCATGTGATCAAGACAAGCCTGGATGATGATAGGCATGATTACTATGCACTTGG GACTTATGCTGACAAGGTTGGAAAATGGTATCCAGATAATCCAGAGATCGATGTTGGTATTGGTATCAGGTACGATTATGGCATATTCTATGCCTCCAAG ACATTTTATGATCAGAGTAAAGGAAGGAGAGTGTTGTGGGGCTGGATTGGAGAGTCTGATAGTGAAGTCGCCGATGTAAAGAAAGGATGGGCATCTCTTC AGGGCATTCCAAGGACAGTTGTGTTGGATACAAAGACAGGTAGCAATCTGCTTCAATGGCCAGTTGAAGAGGTAGAGAGCTTGAGATTAAAAAGCAAGAA TTTTAACAACATAGAGGTTAAGGCAGGGTCAGCTGTACCGCTTGAACTCGATGGAGCCACACAGCTAGACATCGTTGCTGAGTTTGAGTTAGACAGGAAG GCTATAGAGAGAACAGCCGAATCCAATGTGGAGTTCAGCTGCAGCACCAATGGTGGGGCTTCTCACCGCGGTGCATTGGGACCATTTGGCCTTCTAGTTC TTGCAGATGACGATCTCACCGAGTATACTCCCGTATACTTTTTTGTTGCCAAAGGAAATAATGGCAGCCTCAAAACTTTCTTCTGCACTGACCAGTCAAG GTCTTCTGTGGCCAACGACGTTAGAAAAGAAATTTATGGGAGCTATGTTCCTGTATTAGAGGGTGAAAAGTTATCAGTTAGGATATTGGTGGATCATTCG ATAATTGAAAGTTTTGCTCAAGGTGGTAGGACGTGCATCACTTCCCGGGTTTATCCGACGAGGGCAATCTATGGTTCTGCTAGGCTGTTTTTGTTCAACA ATGCTACTGAGGCTGGTGTCACTTCTTCACTCAAGATATGGAATATGAATTCAGCATTCATACGCCCATATTCTAATGAACAACAGTAG
AA sequence Show only first row Show all	>Potri.003G112600.1 pacid=42786096 polypeptide=Potri.003G112600.1.p locus=Potri.003G112600 ID=Potri.003G112600.1.v4.1 annot-version=v4.1 MADPSPLLPVSNSLEPSYSPAPEGAVSAGCPATHLRRSKKVLIAVFSGLLVVSLILATINNNNGGRHVQYHSQEDEDASLATPKEMAKPETLLPAGYSRG VSAGVSEKANVNLKGAQVKDYPWNNSMLSWQRTAFHFQPEENWMNDPNGPLYYKGWYHFFYQYNPHAAVWGDIVWGHAVSKDLIHWLHLPLAMVADKWYD KNGVWTGSATILPDGKIVMLYTGSTNESVQVQNLAYPADHDDPLLLKWVKYSGNPVLVPPPGIGAKDFRDPTTAWKTSEGKWRIIIGSKINKTGIALVYD TEDFINYELLSGILHGVPKTGMWECVDFYPVSKTGQNGLDTSVNGPQVKHVIKTSLDDDRHDYYALGTYADKVGKWYPDNPEIDVGIGIRYDYGIFYASK TFYDQSKGRRVLWGWIGESDSEVADVKKGWASLQGIPRTVVLDTKTGSNLLQWPVEEVESLRLKSKNFNNIEVKAGSAVPLELDGATQLDIVAEFELDRK AIERTAESNVEFSCSTNGGASHRGALGPFGLLVLADDDLTEYTPVYFFVAKGNNGSLKTFFCTDQSRSSVANDVRKEIYGSYVPVLEGEKLSVRILVDHS IIESFAQGGRTCITSRVYPTRAIYGSARLFLFNNATEAGVTSSLKIWNMNSAFIRPYSNEQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Potri.003G112600 [exp]	0	1	INVA.2
AT5G49800			Polyketide cyclase/dehydrase a...		Potri.004G231000 [exp]	7.28	0.7749
AT5G12890			UDP-Glycosyltransferase superf...		Potri.017G077500 [exp]	26.83	0.7472
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Potri.008G188600 [exp]	27.49	0.6769
AT3G57830			Leucine-rich repeat protein ki...		Potri.006G057500 [exp]	31.30	0.7278
AT2G02400			NAD(P)-binding Rossmann-fold s...		Potri.004G230900 [exp]	45.29	0.6865
					Potri.004G013750 [exp]	46.66	0.7229
AT2G15830			unknown protein		Potri.009G107050 [exp]	108.18	0.6856
AT4G27450			Aluminium induced protein with...		Potri.004G040600 [exp]	109.79	0.6128
AT5G47380			Protein of unknown function, D...		Potri.001G157200 [exp]	109.81	0.6792
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Potri.019G076600 [exp]	149.25	0.6560

Compare expression of checked genes

Potri.003G112600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.