Plant FIBer expression Database

Potri.003G112900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G12250 363 / 1e-128 Pentapeptide repeat-containing protein (.1.2)
AT2G44920 58 / 8e-10 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G058800
[exp]
67 / 6e-13 AT2G44920 253 / 1e-85 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Potri.010G200000
[exp]
63 / 9e-12 AT2G44920 256 / 4e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024602
[exp]
373 / 3e-131 AT1G12250 354 / 1e-123 Pentapeptide repeat-containing protein (.1.2)
Lus10032239
[exp]
371 / 3e-130 AT1G12250 357 / 9e-125 Pentapeptide repeat-containing protein (.1.2)
Lus10000520
[exp]
66 / 1e-12 AT2G44920 286 / 6e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Lus10002712
[exp]
64 / 8e-12 AT2G44920 287 / 3e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0505 Pentapeptide PF13599 Pentapeptide_4 Pentapeptide repeats (9 copies)
Representative CDS sequence
>Potri.003G112900.4 pacid=42786209 polypeptide=Potri.003G112900.4.p locus=Potri.003G112900 ID=Potri.003G112900.4.v4.1 annot-version=v4.1
ATGGCTTTCACTTCTATCTCCTCGATGTCCATTAAGTCTCCTAACATCTCCACTCCACATCGTATTCTTTCTTTATCTAAGCCTTTCCGCATAGCTTATC
AATTAGACACAGAAAGAGGAAACCAATTTGCTGATTGTTCCAAAAATGGGTACGAGGTGGAAACTGCTAAAGCCAAGAATTGGGCAAGGGTAGTGTCAAC
TACATTGGTAGCTGCAGCTATTAGCTTCAGTTCTTGTAATTTGCCTGCTGTTGCTGATCTTAATAGGTTTGAAGCTGAGACGCGTGGGGAATTTGGTATA
GGGTCAGCAGCGCAATTTGGTTCTGCAGATCTCAGAAAGGCAGTGCATTTGAATGAAAATTTCAGAAGAGCCAATTTTACAGCTGCTGATATGAGAGAAT
CTGATTTTAGTGGTTCAACATTCAATGGTGCATACCTGGAGAAAGCAGTTGCATATAAGGCAAATTTTACAGGTGCGGATTTGAGTGATACATTGATGGA
TCGCATGGTTCTCAATGAATCTAACCTCACCAATGCTGTGCTTGTTAGATCAGTACTCACACGCAGTGATCTTGGAGGTGCACTGATTGCAGGTGCTGAC
TTCAGTGATGCTGTTATAGATCTTCCTCAGAAACAGGCTCTTTGCAAGTATGCTAGTGGCACAAATCCAATTACCGGGGTAAGCACCAGAGCAAGCTTAG
GCTGCGGAAACAGCAGAAGAAATGCTTATGGCACGCCTTCTTCTCCTCTGTTGAGTGCTCCCCCTCAGAAACTGCTGGACCGCGATGGTTTTTGTGATCA
AGGCACTGGTCTTTGCGATGCGAAATAA
AA sequence
>Potri.003G112900.4 pacid=42786209 polypeptide=Potri.003G112900.4.p locus=Potri.003G112900 ID=Potri.003G112900.4.v4.1 annot-version=v4.1
MAFTSISSMSIKSPNISTPHRILSLSKPFRIAYQLDTERGNQFADCSKNGYEVETAKAKNWARVVSTTLVAAAISFSSCNLPAVADLNRFEAETRGEFGI
GSAAQFGSADLRKAVHLNENFRRANFTAADMRESDFSGSTFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNESNLTNAVLVRSVLTRSDLGGALIAGAD
FSDAVIDLPQKQALCKYASGTNPITGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQKLLDRDGFCDQGTGLCDAK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G12250 Pentapeptide repeat-containing... Potri.003G112900
[exp]
0 1
AT4G03520 ATHM2 Thioredoxin superfamily protei... Potri.005G058400
[exp]
2.44 0.9820 PtrTrxm3
AT3G12345 unknown protein Potri.010G213600
[exp]
4.69 0.9799
AT3G61870 unknown protein Potri.014G102400
[exp]
7.34 0.9774
AT4G21860 MSRB2 methionine sulfoxide reductase... Potri.001G286500
[exp]
7.48 0.9703
AT3G54210 Ribosomal protein L17 family p... Potri.006G113500
[exp]
8.94 0.9762
AT3G02100 UDP-Glycosyltransferase superf... Potri.004G123500
[exp]
10.95 0.9654
AT1G68590 Ribosomal protein PSRP-3/Ycf65... Potri.008G118700
[exp]
11.74 0.9713
AT3G09210 PTAC13 plastid transcriptionally acti... Potri.006G094800
[exp]
11.83 0.9745
AT4G11175 Nucleic acid-binding, OB-fold-... Potri.006G241100
[exp]
13.41 0.9690
AT4G37510 Ribonuclease III family protei... Potri.007G053000
[exp]
14.83 0.9680

Potri.003G112900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.