Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62710 704 / 0 BETAVPE, BETA-VPE beta vacuolar processing enzyme (.1) AT4G32940 566 / 0 GAMMAVPE, GAMMA-VPE gamma vacuolar processing enzyme (.1) AT2G25940 566 / 0 ALPHAVPE, ALPHA-VPE alpha-vacuolar processing enzyme (.1) AT3G20210 422 / 3e-144 DELTAVPE, DELTA-VPE delta vacuolar processing enzyme (.1.2) AT1G08750 88 / 9e-19 Peptidase C13 family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G119800 [exp] 918 / 0 AT1G62710 720 / 0.0 beta vacuolar processing enzyme (.1) Potri.006G232900 [exp] 588 / 0 AT4G32940 742 / 0.0 gamma vacuolar processing enzyme (.1) Potri.018G059400 [exp] 586 / 0 AT4G32940 752 / 0.0 gamma vacuolar processing enzyme (.1) Potri.008G003400 [exp] 484 / 1e-167 AT2G25940 534 / 0.0 alpha-vacuolar processing enzyme (.1) Potri.019G014000 [exp] 89 / 9e-19 AT1G08750 608 / 0.0 Peptidase C13 family (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024599 [exp] 707 / 0 AT1G62710 709 / 0.0 beta vacuolar processing enzyme (.1) Lus10032236 [exp] 705 / 0 AT1G62710 712 / 0.0 beta vacuolar processing enzyme (.1) Lus10007450 [exp] 594 / 0 AT4G32940 754 / 0.0 gamma vacuolar processing enzyme (.1) Lus10024446 [exp] 564 / 0 AT4G32940 717 / 0.0 gamma vacuolar processing enzyme (.1) Lus10033344 [exp] 468 / 5e-162 AT2G25940 473 / 3e-164 alpha-vacuolar processing enzyme (.1) Lus10034798 [exp] 252 / 4e-80 AT2G25940 260 / 9e-84 alpha-vacuolar processing enzyme (.1) Lus10034797 [exp] 104 / 3e-27 AT3G20210 104 / 4e-28 delta vacuolar processing enzyme (.1.2) Lus10006570 [exp] 89 / 5e-19 AT1G08750 578 / 0.0 Peptidase C13 family (.1.2.3) Lus10005520 [exp] 89 / 1e-18 AT1G08750 582 / 0.0 Peptidase C13 family (.1.2.3) Lus10006571 [exp] 52 / 7e-07 AT1G08750 460 / 1e-163 Peptidase C13 family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0093 [poplar] [flax] Peptidase_CD PF01650 [poplar] [flax] Peptidase_C13 Peptidase C13 family
Representative CDS sequence Show only first row Show all	>Potri.003G113300.1 pacid=42786424 polypeptide=Potri.003G113300.1.p locus=Potri.003G113300 ID=Potri.003G113300.1.v4.1 annot-version=v4.1 ATGGAGACCCATAAGCCCTATTTTCTGTCCGCTATTTTCGTACTTGTGATGCTGTCTTTTCTACATGAACAAAGTAGCCAGGCCGCTCGGTTAAACCCGG TTGAAGCGGGAATTCTTATGCCAACAGAGAAAGATGGACCGGAAGTTGATGATGATGATGGTAAGGAAATTGGCACGAGATGGGCAGTTCTTGTGGCCGG TTCAAATGGTTATGGAAATTACAGGCATCAGGCGGATGTCTGCCATGCGTATCAACTACTAAGAAAAGGTGGGATAAAGGAAGAGAACATAGTAGTGTTT ATGTATGATGATATAGCTAAGCATGAGTTCAACCCAAGACCTGGAGTTATCATCAACCATCCTCAAGGAGATGATGTTTATGCCGGTGTGCCTAAGGATT ACACCGGCGTACAGGTCACCACTGAGAATCTGTATGCAGTACTTCTTGGTAACAAGAGTGCTGTCAAAGGTGGAAGTGGCAAGGTTGTGGATAGCATGCC CAATGACAGGATCTTCTTGTACTATTCTGATCACGGAGGTCCTGGAGTTCTTGGGATGCCAACTATGCCTTTTCTATATGCAATGGATTTCATTGAGGTT TTAAAGAAGAAACATGCATCTGGGAGTTACAAAGAAATGGTCATGTATATAGAAGCTTGTGAGAGTGGGAGCATCTTCGAAGGGATCATGCCCAAGGACA TAAACATTTACGTGACAACAGCATCAAATGCGGAAGAGAATAGCTGGGGAACTTATTGTCCTGGGATGGAGCCAGCTCCACCTCCAGAGTATTTCACTTG CTTAGGGGACTTGTACAGTGTTTCTTGGATGGAAGATAGTGGAAAACACAATCTCAGAAGAGAAACAATAGAGCAACAATATCATTCGGTGAAGGAGAGG ACTTCCAATTACAATACGTTCACTTCCGGATCCCATGTGATGCAATATGGGAACAAAAGCATCAAAGGAGAGAAGCTTTATTTGTACCAAGGTTTCAATC CTGCTAGTGTAAACTTCCCTCCAAACAATGTCCACATTGGTGGGCGTATGGATGTTGTTAACCAGAGAGACGCAGAGCTTGTTTTCCTCTGGCAAATGTA CAAAAGATCCGAGGATGGTTCAGAAAAGAAGACACAAATCCTCAATCAGATTAAAGAGACTATGAGGCATAGAACTCAGTTGGACAGCAGCATGGAATTG ATTGGAACACTATTATTTGGACATAAAAAAGGTTCCGCCATACTTAAATCTGTTAGGGAACCCGGTTCTCCCCTAGTAGATGACTGGACATGCTTAAAAT CGATGGTTCGACGGTTTGAAACACACTGTGGATCATTGACGCAGTATGGCATGAAACACATGCGAGCATTTGCTAACATTTGCAATGGTGGTGTCTCTCA AGCCTCCATGGAGGAAGCTTGTATCGCGGCATGTAGCGGCCACGAATTCGGGGACTTGCGTCCTTCAGACCAAGGTTACAGTGCTTGA
AA sequence Show only first row Show all	>Potri.003G113300.1 pacid=42786424 polypeptide=Potri.003G113300.1.p locus=Potri.003G113300 ID=Potri.003G113300.1.v4.1 annot-version=v4.1 METHKPYFLSAIFVLVMLSFLHEQSSQAARLNPVEAGILMPTEKDGPEVDDDDGKEIGTRWAVLVAGSNGYGNYRHQADVCHAYQLLRKGGIKEENIVVF MYDDIAKHEFNPRPGVIINHPQGDDVYAGVPKDYTGVQVTTENLYAVLLGNKSAVKGGSGKVVDSMPNDRIFLYYSDHGGPGVLGMPTMPFLYAMDFIEV LKKKHASGSYKEMVMYIEACESGSIFEGIMPKDINIYVTTASNAEENSWGTYCPGMEPAPPPEYFTCLGDLYSVSWMEDSGKHNLRRETIEQQYHSVKER TSNYNTFTSGSHVMQYGNKSIKGEKLYLYQGFNPASVNFPPNNVHIGGRMDVVNQRDAELVFLWQMYKRSEDGSEKKTQILNQIKETMRHRTQLDSSMEL IGTLLFGHKKGSAILKSVREPGSPLVDDWTCLKSMVRRFETHCGSLTQYGMKHMRAFANICNGGVSQASMEEACIAACSGHEFGDLRPSDQGYSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G62710		BETAVPE, BETA-V...	beta vacuolar processing enzym...		Potri.003G113300 [exp]	0	1
AT1G04570			Major facilitator superfamily ...		Potri.008G173600 [exp]	2.00	0.8134
AT1G62510			Bifunctional inhibitor/lipid-t...		Potri.003G111400 [exp]	3.46	0.7953
AT2G19170		SLP3	subtilisin-like serine proteas...		Potri.001G092700 [exp]	7.81	0.7258
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Potri.009G042500 [exp]	8.48	0.7481
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Potri.003G142100 [exp]	9.48	0.7757
AT5G12330		LRP1	LATERAL ROOT PRIMORDIUM 1, Lat...		Potri.001G276200 [exp]	9.48	0.7958
AT1G72830	CCAAT	NF-YA3, ATHAP2C...	"nuclear factor Y, subunit A3"...		Potri.018G064700 [exp]	9.89	0.7933
AT1G22540			Major facilitator superfamily ...		Potri.019G079700 [exp]	12.12	0.7624
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Potri.007G138002 [exp]	12.96	0.7772
AT5G06510	CCAAT	NF-YA10	"nuclear factor Y, subunit A10...		Potri.006G201900 [exp]	17.40	0.7990

Compare expression of checked genes

Potri.003G113300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.