Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	STI.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12400 830 / 0 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT1G12270 813 / 0 Hop1 Hop1, stress-inducible protein, putative (.1) AT1G62740 812 / 0 Hop2 Hop2, stress-inducible protein, putative (.1) AT4G08320 89 / 8e-19 TPR8 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G42810 86 / 1e-17 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT1G04190 84 / 1e-17 TPR3 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G04710 76 / 3e-14 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT1G53300 71 / 1e-12 TTL1 tetratricopetide-repeat thioredoxin-like 1 (.1) AT5G65160 67 / 2e-11 TPR14 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) AT3G17970 67 / 3e-11 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G119500 [exp] 945 / 0 AT4G12400 864 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.008G156500 [exp] 96 / 1e-21 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G177400 [exp] 96 / 4e-21 AT4G08320 406 / 1e-139 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G082900 [exp] 95 / 5e-21 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G054800 [exp] 87 / 8e-18 AT3G04710 611 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.014G141800 [exp] 85 / 4e-17 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) Potri.013G042300 [exp] 84 / 5e-17 AT3G04710 619 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.015G038600 [exp] 77 / 2e-14 AT3G17970 747 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.012G046900 [exp] 76 / 4e-14 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024597 [exp] 847 / 0 AT1G62740 886 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10032234 [exp] 845 / 0 AT1G62740 892 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10028919 [exp] 840 / 0 AT1G62740 890 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10004336 [exp] 825 / 0 AT1G62740 873 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10041189 [exp] 96 / 2e-21 AT1G04190 516 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025656 [exp] 89 / 7e-19 AT4G08320 379 / 9e-130 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10018179 [exp] 89 / 7e-19 AT4G08320 389 / 9e-134 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10021905 [exp] 87 / 2e-18 AT1G04190 515 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003260 [exp] 88 / 4e-18 AT3G04710 587 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10006559 [exp] 87 / 9e-18 AT3G04710 581 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00515 [poplar] [flax] TPR_1 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13371 [poplar] [flax] TPR_9 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.003G113400.1 pacid=42785633 polypeptide=Potri.003G113400.1.p locus=Potri.003G113400 ID=Potri.003G113400.1.v4.1 annot-version=v4.1 ATGGCCGAAGAAGCCAAATCCCGAGGCAACGCGGCCTTCTCAGCCCGCGACTACGCCACCGCCGTCGAACACTTCACCGACGCCATCGCCCTTTCCCCAA CCAATCACGTTCTCTACTCTAACCGGTCGGCGGCTCACGCGTCTCTCCACCACTACGCCGATGCTTTAAAAGACGCTAAGAAAACCGTTGAGCTGAAGCC GGACTGGTCGAAAGGTTACTCTCGCCTCGGCGCCGCTCATCTCGGCTTGCACCAAATCCAAGACGCTATCTCTGCTTACAAGAAAGGACTCGAGATTGAT CCTAATAATGAAGGATTAAAATCCGGTTTGGCGGATGCTCAAGCAGCTGCCTCCCAGAGCCGCGCTGCGCCAGCGCCTAGTCCGTTTGGTAACGTATTCT CCGGTCCGGAGATGTGGGCGAAGTTAACAGCGGATCCGTCGACGAGAATGTATTTGCAGCAGCCGGATTTCGTTAAGATGATGCAAGAGATTCAGAAAAA CCCTAGTAATTTGAATCTCTACTTGAAGGATCAGAGAGTGATGCAGGCTATTGGGGTTTTGTTGAATGTTAAGTTTGGAGGGCCGAATTCAGGGGACGAT ATGGAGATTCCGGAGGAGACGTCCACTCCTCAGTCCTCTGCGTCGGAGAGGAAGGAAGATAAGAAGATGGAGGAGGAGAAGGTAGCGGAGCCAGAGCCAA TGGAGGTAACGGGGGAGGAGAAGGAGGAGAAGGAGGCGAAGGAGAGGAAAGCTCAAGCAGCGAAAGAGAAGGAGTTGGGGAATGCAGCTTATAAAAAGAA GGAATTTGAGAAGGCTATTGAGCATTATACAAAGGCGACAGAGCTTGATGATGAGGATATTTCGTATTTGACGAATCGTGCTGCTGTTTATTTGGAGACG GGAAAGTATGATGAATGTATTAAAGATTGTGACAAAGCTGTTGAAAGAGGTAGAGAGCTTAGATCAGACTTTAAGATGGTAGCAAGAGCATTGACAAGGA AAGGAACTGCCTTGGTGAAAATGGCAAAATGCTCACGGGACTATGAACCTGCCATTGAGACTTTCCAGAAGGCCCTTACAGAGCATCGCAATCCAGACAC GCTGAAGAAGCTAAATGAGGCGGAGAAAGCAAAGAAGGATCTTGAGCAACAAGAATACTTTGATCCAAAATTGGCTGAGGAAGAGCGTGAGAAAGGCAAT GAATCTTTCAAGCAGCAGAAGTATCCAGAGGCTGTGAAGCACTACTCAGAATCTTTGAGAAGGAATCCTAAAGATCCCAAGACATATAGTAACAGAGCTG CATGCTACACCAAACTTGGGGCTCTTCCTGAGGGATTGAAGGATGCAGAGATGTGCATTGAACTTGATCCCACATTCTCAAAGGGTTATACAAGAAAAGG TGCTGTTCAATTCTTCATGAAAGAGTATGATAAAGCCTTGGAAACTTATCAGGAGGGTCTGAAACATGACCCTCGGAACCAGGAATTGTTAGATGGTGTT AGAAGATGTGTGGAACAGCTCAATAAGGCCAGTCGTGGTGACCTAAGCCCTGAGGAGCTAAAGGAAAGACAGGCCAAGGGAATGCAGGACCCAGAAATTC AGAACATTCTCTCAGATCCCGTCATGAGACAGGTGTTGGTTGACTTCCAAGAGAATCCCAAGTCTGCTCAGGAACACACGAAGAACCCAATGGTGATGAG CAAGATTCAGAAGCTTGTCCAAGCTGGAATTGTCCAGATGAGATAG
AA sequence Show only first row Show all	>Potri.003G113400.1 pacid=42785633 polypeptide=Potri.003G113400.1.p locus=Potri.003G113400 ID=Potri.003G113400.1.v4.1 annot-version=v4.1 MAEEAKSRGNAAFSARDYATAVEHFTDAIALSPTNHVLYSNRSAAHASLHHYADALKDAKKTVELKPDWSKGYSRLGAAHLGLHQIQDAISAYKKGLEID PNNEGLKSGLADAQAAASQSRAAPAPSPFGNVFSGPEMWAKLTADPSTRMYLQQPDFVKMMQEIQKNPSNLNLYLKDQRVMQAIGVLLNVKFGGPNSGDD MEIPEETSTPQSSASERKEDKKMEEEKVAEPEPMEVTGEEKEEKEAKERKAQAAKEKELGNAAYKKKEFEKAIEHYTKATELDDEDISYLTNRAAVYLET GKYDECIKDCDKAVERGRELRSDFKMVARALTRKGTALVKMAKCSRDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKDLEQQEYFDPKLAEEEREKGN ESFKQQKYPEAVKHYSESLRRNPKDPKTYSNRAACYTKLGALPEGLKDAEMCIELDPTFSKGYTRKGAVQFFMKEYDKALETYQEGLKHDPRNQELLDGV RRCVEQLNKASRGDLSPEELKERQAKGMQDPEIQNILSDPVMRQVLVDFQENPKSAQEHTKNPMVMSKIQKLVQAGIVQMR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12400		Hop3	Hop3, stress-inducible protein...		Potri.003G113400 [exp]	0	1	STI.3
AT3G16050		A37, ATPDX1.2	ARABIDOPSIS THALIANA PYRIDOXIN...		Potri.001G182100 [exp]	4.69	0.9674	Pt-A37.1
AT4G12400		Hop3	Hop3, stress-inducible protein...		Potri.001G119500 [exp]	5.91	0.9189	STI.2
AT2G29500			HSP20-like chaperones superfam...		Potri.004G187202 [exp]	7.34	0.9635
AT5G59720		HSP18.2 HSP18.1...	heat shock protein 18.2 (.1)		Potri.008G062350 [exp]	9.59	0.9618
AT2G29500			HSP20-like chaperones superfam...		Potri.004G187450 [exp]	10.95	0.9617
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Potri.013G018000 [exp]	12.96	0.9603	HSP70.11
AT5G59720		HSP18.2 HSP18.1...	heat shock protein 18.2 (.1)		Potri.008G062300 [exp]	13.19	0.9607	HSP18.2
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Potri.008G054000 [exp]	13.41	0.9592
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Potri.003G109200 [exp]	14.14	0.9597	HSP23.1
AT3G10020			unknown protein		Potri.013G014300 [exp]	17.60	0.9572

Compare expression of checked genes

Potri.003G113400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.