Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62750 1311 / 0 ATSCO1, ATSCO1/CPEF-G SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1) AT1G45332 582 / 0 Translation elongation factor EFG/EF2 protein (.1) AT2G45030 579 / 0 Translation elongation factor EFG/EF2 protein (.1) AT2G31060 105 / 3e-23 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) AT5G13650 100 / 1e-21 SVR3 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) AT3G22980 97 / 2e-20 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT1G56070 96 / 6e-20 LOS1, AT1G56075.1 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT5G39900 90 / 2e-18 Small GTP-binding protein (.1) AT3G12915 88 / 1e-17 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT5G08650 86 / 3e-17 Small GTP-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G123600 [exp] 595 / 0 AT1G45332 1337 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Potri.003G109900 [exp] 591 / 0 AT1G45332 1330 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Potri.018G114900 [exp] 123 / 1e-28 AT1G06220 1710 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.006G190600 [exp] 119 / 2e-27 AT1G06220 1744 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.013G123700 [exp] 105 / 3e-23 AT2G31060 1084 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Potri.006G053000 [exp] 101 / 7e-22 AT5G13650 1123 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Potri.005G098100 [exp] 99 / 3e-21 AT1G56070 1648 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065600 [exp] 99 / 6e-21 AT1G56070 1620 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065700 [exp] 99 / 6e-21 AT1G56070 1623 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028909 [exp] 1322 / 0 AT1G62750 1334 / 0.0 SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1) Lus10004326 [exp] 1319 / 0 AT1G62750 1332 / 0.0 SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1) Lus10018604 [exp] 587 / 0 AT2G45030 1343 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Lus10039840 [exp] 570 / 0 AT2G45030 1289 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Lus10031186 [exp] 100 / 4e-22 AT1G56070 902 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10039896 [exp] 98 / 6e-21 AT2G31060 976 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Lus10031185 [exp] 94 / 8e-21 AT1G56070 504 / 6e-175 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10002179 [exp] 98 / 9e-21 AT2G31060 1036 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Lus10031779 [exp] 98 / 1e-20 AT3G12915 760 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10007535 [exp] 97 / 1e-20 AT5G13650 1121 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00009 [poplar] [flax] GTP_EFTU Elongation factor Tu GTP binding domain CL0437 [poplar] [flax] EF-G_C PF00679 [poplar] [flax] EFG_C Elongation factor G C-terminus CL0575 [poplar] [flax] EFTPs PF03144 [poplar] [flax] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0329 [poplar] [flax] S5 PF03764 [poplar] [flax] EFG_IV Elongation factor G, domain IV CL0437 [poplar] [flax] EF-G_C PF14492 [poplar] [flax] EFG_III Elongation Factor G, domain III
Representative CDS sequence Show only first row Show all	>Potri.003G113500.1 pacid=42787254 polypeptide=Potri.003G113500.1.p locus=Potri.003G113500 ID=Potri.003G113500.1.v4.1 annot-version=v4.1 ATGGCAGCGGAGACAGTGAGGCTAACAGGTTCAGCCTCAGGTTCAAGCACACCCTGCAATTTCAATGGGTCTCAAAGAAGACCAACTCACCTTCTTGGTC TCCCTTCTTCTCGTGCTTCAATTTCAATCTCTTCTTCTCTCTCTCATTTCCTGGGAAGCTCTGCGCGCATTGCCTCACACTCTTCTAAGTTCTCAACTTC ACGCCAACTGCGAGGGAGGAGGAGAAACTTCTCCGTCTTTGCCATGGCTGCTGATGAGGCAAAGCGTACGGTGCCTTTGAAAGATTACCGGAACATAGGG ATTATGGCTCACATAGATGCAGGAAAGACTACTACAACCGAACGGATTCTGTACTATACAGGAAGAAACTACAAAATAGGGGAGGTACATGAGGGAACAG CTACAATGGACTGGATGGAACAAGAGCAAGAAAGAGGGATCACCATTACTTCTGCTGCAACTACCACATTTTGGAACAAGCATCGCATCAACATTATTGA TACTCCTGGCCATGTTGATTTCACACTTGAAGTGGAACGAGCTCTCAGGGTTTTGGACAGTGCTATCTGCTTGTTTGACAGTGTTGCTGGTGTGGAACCA CAATCTGAAACTGTGTGGAGGCAAGCGGATAAATATGGAGTGCCCAGAATTTGCTTTGTCAATAAGATGGATCGGCTTGGAGCAAACTTTTTCCGAACTC GAGACATGATAGTGACAAACTTGGGTGCCAAACCACTTGTTATTCAAATCCCAATTGGTTCAGAAGATAGCTTTAAAGGAATTGTTGATCTTGTGAAAAT GAAAGCTATAGTTTGGTCAGGAGAAGAATTGGGTGCAAAGTTTGCATATGAGGATATTCCAGCTGATCTTCAAGAGTTGGCTCAAGAATACCGTGCACAG ATGATAGAGACCATAGTTGAGCTGGATGATGAAGCTATGGAGGGCTATCTAGAGGGAGTTGAGCCTGAGGAGGAAACAATCAAGATATTAATTAGGAAAG GAACGATTGCAAGCATTTTTGTCCCTGTCTTATGTGGCTCTGCTTTTAAGAATAAGGGGGTTCAGCCATTGCTTGATGCTGTCATTGATTATTTGCCTTC GCCTATTGACTTGCCAGCAATGCAGGGTTCTGATCCTGAGAACCCAGAAGTGACAATTGAAAGGGCTGCAACTGATGATGAACCATTTGCTGGACTAGCA TTCAAGATCATGACTGATTCATTTGTGGGATCCCTCACATTCGTGAGAGTGTATTCAGGGAAGCTAAGTGCAGGATCTTATGTAATGAATGCGAACAAAG GTAAAAAAGAGAGAATTGGAAGACTTCTAGAAATGCATGCCAATAGCAGAGAGGACGTTAAAGTAGCTTTAACTGGTGATATAGTTGCTCTTGCTGGTCT AAAAGATACCATAACCGGTGAAACTCTTTGTGATCCTGATAATCCTATTGTGCTTGAGAGGATGGACTTCCCTGATCCTGTCATTAAGGTTGCAATTGAA CCCAAGACTAAAGCTGATGTTGATAAGATGACGACTGGTTTGGTCAAACTTGCACAGGAAGACCCTTCTTTCCACTTCTCACGTGATGAAGAAATCAACC AGACAGTGATCGAAGGAATGGGAGAATTGCATCTTGAGATTATTGTAGATCGCCTCAAGAGAGAATTTAAGGTAGAAGCAAATGTTGGTGCACCACAAGT GAACTACCGTGAAAGCATTTCCAAAGTAGCAGAAGTGAAGTACGTCCACAAAAAACAGTCTGGTGGGCAAGGACAGTTTGCTGATATAACAGTGCGGTTT GAGCCCATGGAGGCAGGGACTGGATATGAGTTCAAAAGTGAAATCAAGGGAGGTGCAGTGCCAAGAGAATATGTTCCTGGAGTGATGAAAGGACTCGAGG AGTGCATGTCTAACGGAGTGCTTGCTGGCTTTCCTGTTGTCGACGTACGTGCTGTTTTGGTAGATGGTTCTTACCATGATGTTGATTCAAGTGTGTTGGC ATTTCAACTGGCGGCCAGAGGGGCTTTCAGGGAAGGGATAAAGAAAGCTGGTCCAAGAATGCTAGAACCTATAATGAAAGTTGAAGTGGTCACACCTGAA GAACATTTGGGTGATGTTATTGGTGATCTCAACTCAAGAAGAGGTCAGATCAACAGCTTTGGTGACAAACCTGGTGGTTTGAAGGTGGTTGATTCCCTTG TTCCACTGGCTGAGATGTTCCAATATGTTAGTACACTTCGAGGAATGACGAAAGGGCGTGCATCCTACACCATGCAATTAGCCAAGTTTGATGTTGTCCC TCAACATATCCAAAACCAGCTTGCTGCGAAAGAACAAGAAGTTGCTGCTTGA
AA sequence Show only first row Show all	>Potri.003G113500.1 pacid=42787254 polypeptide=Potri.003G113500.1.p locus=Potri.003G113500 ID=Potri.003G113500.1.v4.1 annot-version=v4.1 MAAETVRLTGSASGSSTPCNFNGSQRRPTHLLGLPSSRASISISSSLSHFLGSSARIASHSSKFSTSRQLRGRRRNFSVFAMAADEAKRTVPLKDYRNIG IMAHIDAGKTTTTERILYYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWNKHRINIIDTPGHVDFTLEVERALRVLDSAICLFDSVAGVEP QSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVIQIPIGSEDSFKGIVDLVKMKAIVWSGEELGAKFAYEDIPADLQELAQEYRAQ MIETIVELDDEAMEGYLEGVEPEEETIKILIRKGTIASIFVPVLCGSAFKNKGVQPLLDAVIDYLPSPIDLPAMQGSDPENPEVTIERAATDDEPFAGLA FKIMTDSFVGSLTFVRVYSGKLSAGSYVMNANKGKKERIGRLLEMHANSREDVKVALTGDIVALAGLKDTITGETLCDPDNPIVLERMDFPDPVIKVAIE PKTKADVDKMTTGLVKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVAEVKYVHKKQSGGQGQFADITVRF EPMEAGTGYEFKSEIKGGAVPREYVPGVMKGLEECMSNGVLAGFPVVDVRAVLVDGSYHDVDSSVLAFQLAARGAFREGIKKAGPRMLEPIMKVEVVTPE EHLGDVIGDLNSRRGQINSFGDKPGGLKVVDSLVPLAEMFQYVSTLRGMTKGRASYTMQLAKFDVVPQHIQNQLAAKEQEVAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G62750		ATSCO1, ATSCO1/...	SNOWY COTYLEDON 1, Translation...		Potri.003G113500 [exp]	0	1
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Potri.019G118500 [exp]	2.00	0.9859	PETC.1
AT5G61410		RPE, EMB2728	EMBRYO DEFECTIVE 2728, D-ribul...		Potri.015G062100 [exp]	2.82	0.9844
AT1G64680			unknown protein		Potri.001G083300 [exp]	3.87	0.9827
AT3G01060			unknown protein		Potri.017G090100 [exp]	4.00	0.9796
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Potri.016G016000 [exp]	4.89	0.9789
AT2G41040			S-adenosyl-L-methionine-depend...		Potri.006G060400 [exp]	6.00	0.9770
AT3G17930			unknown protein		Potri.015G036500 [exp]	6.16	0.9716
AT4G29670		ACHT2	atypical CYS HIS rich thiored...		Potri.006G150700 [exp]	6.48	0.9710
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Potri.002G083500 [exp]	8.06	0.9793	NPQ4.1
AT3G25690		AtCHUP1, CHUP1	Arabidopsis thaliana CHLOROPLA...		Potri.010G130800 [exp]	8.12	0.9645

Compare expression of checked genes

Potri.003G113500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.