Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22670 335 / 6e-112 ATHIP1, TPR11 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) AT3G17880 290 / 5e-95 ATHIP2, ATTDX HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) AT4G12400 66 / 3e-11 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT1G62740 63 / 2e-10 Hop2 Hop2, stress-inducible protein, putative (.1) AT1G12270 57 / 2e-08 Hop1 Hop1, stress-inducible protein, putative (.1) AT3G58620 56 / 4e-08 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT1G04190 54 / 6e-08 TPR3 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G42580 52 / 7e-07 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1) AT5G03160 48 / 1e-05 ATP58IPK homolog of mamallian P58IPK (.1) AT3G04710 47 / 2e-05 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G118900 [exp] 370 / 4e-126 AT4G22670 333 / 3e-111 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) Potri.015G036000 [exp] 290 / 5e-95 AT3G17880 396 / 3e-137 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Potri.012G045000 [exp] 249 / 7e-80 AT3G17880 379 / 4e-131 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Potri.001G119500 [exp] 61 / 6e-10 AT4G12400 864 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.013G042300 [exp] 60 / 1e-09 AT3G04710 619 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.005G054800 [exp] 59 / 2e-09 AT3G04710 611 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.003G113400 [exp] 59 / 5e-09 AT4G12400 830 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.001G205300 [exp] 58 / 9e-09 AT5G09420 724 / 0.0 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) Potri.005G014100 [exp] 56 / 2e-08 AT1G56440 476 / 1e-165 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032227 [exp] 336 / 2e-112 AT4G22670 403 / 2e-138 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) Lus10024590 [exp] 331 / 3e-110 AT4G22670 394 / 9e-135 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) Lus10031334 [exp] 272 / 2e-87 AT3G17880 456 / 3e-160 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Lus10018004 [exp] 67 / 1e-11 AT3G17970 711 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10028919 [exp] 66 / 2e-11 AT1G62740 890 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10032234 [exp] 66 / 2e-11 AT1G62740 892 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10024597 [exp] 65 / 6e-11 AT1G62740 886 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10042001 [exp] 63 / 2e-10 AT3G17970 714 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10004336 [exp] 63 / 2e-10 AT1G62740 873 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10031418 [exp] 56 / 4e-08 AT1G56440 436 / 1e-150 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.003G114000.1 pacid=42787411 polypeptide=Potri.003G114000.1.p locus=Potri.003G114000 ID=Potri.003G114000.1.v4.1 annot-version=v4.1 ATGATGGACGCAACAAAACTAGAAGAACTGAAGCAATTTATTGAACAGTGCAAATCCAATCCTTCCATCCTCGCCGATCCTTCTCTTTCCTTCTTCCACG ACTACCTCGAAAGTCTTGGTGCTAAGCTCCCTGCCTGTGCTCACAAGCACGACGACTCCAAATCGAAGAGTTATGTGGTCGAGGAGAGTGATGAGGAAAT GGAGAAGGAAGAGTCACAAGGAGAACCTGAAGTCGAGGAGGAGGAGGAGGAGATAATTGAATCCGATGTTGAGCTCGAAGGCGAGACTGTTGAGCCTGAT AATGATCCTCCACAGAAGATGGGGGACCCATCTGTAGAGGTTACAGAAGAAAGTCGTGATGCTTCTCAAGAGGCCAAGGCTAAGGCCATGGAAGCTATCT CTGAAGGTAAATTGGAGGAAGCAATTGAGCATTTGACAGAAGCAATTTCACTCAATCCAACATCTGCAATAATGTATGCAACAAGAGCTACTGTTTACAT CAAAATGAAGAGGCCCAATGCTGCTATCCGGGATGCTAATGCTGCTCTTGAGATTAACCTGGATTCAGCTAAGGGATATAAGTCCCGTGGCATGGCACGA GCAATGCTTGGTCAGTGGGAAGATGCTGCTAAGGATCTCCACCTGGCATCAAAGTTAGATTACGATGAGGAGATAAGTGCTGTACTTAAGAAGGTTGAAC CAAACGCTCATAGGATTGAGGAACACCGCAGGAAGTATGAAAGGCTACACAAAGAGAGGGAGGATAGAAAGGCTGAGCGTGAGAGACAACGTCGTCGTGC TAAAGCTCAGGCTGAGTATGAGAAGGCCAAGAAGCAAGAGCAATCATCTTCCAGTAGAAAACCTGGAGGCATGCCAAGTGGATTTCCAGGAGGATTTCCA GGAGGTATGCCCGGGGGCATGCCTGGAGGTATGCCCGGGGGCATGCCTGGAGGGATGCCCGGGGGAATGCCTGGAGGTATGCCCGGGGGAATGCCTGGAG GCTTCCCAGGTGCCATGCCAGGAGGGATGCCTGGAGGCTTCCCGGGTGCCATGCCAGGAGGGATGCCTGGAAATGTTGATTTCAGCAAAATATTGAATGA CCCTGAATTGATGGCTGCATTTAGTGACCCGGAAATAATGGCTGCCCTTCAAGATGTGATGAAGAACCCAGCTAATCTTGCTAAGCATCAAGGGAACCCC AAGGTGGCTCCTATAATTGCAAAGATGATGGGCAAATTTGCCGGGCCTAAGTGA
AA sequence Show only first row Show all	>Potri.003G114000.1 pacid=42787411 polypeptide=Potri.003G114000.1.p locus=Potri.003G114000 ID=Potri.003G114000.1.v4.1 annot-version=v4.1 MMDATKLEELKQFIEQCKSNPSILADPSLSFFHDYLESLGAKLPACAHKHDDSKSKSYVVEESDEEMEKEESQGEPEVEEEEEEIIESDVELEGETVEPD NDPPQKMGDPSVEVTEESRDASQEAKAKAMEAISEGKLEEAIEHLTEAISLNPTSAIMYATRATVYIKMKRPNAAIRDANAALEINLDSAKGYKSRGMAR AMLGQWEDAAKDLHLASKLDYDEEISAVLKKVEPNAHRIEEHRRKYERLHKEREDRKAERERQRRRAKAQAEYEKAKKQEQSSSSRKPGGMPSGFPGGFP GGMPGGMPGGMPGGMPGGMPGGMPGGMPGGMPGGFPGAMPGGMPGGFPGAMPGGMPGNVDFSKILNDPELMAAFSDPEIMAALQDVMKNPANLAKHQGNP KVAPIIAKMMGKFAGPK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22670		ATHIP1, TPR11	tetratricopeptide repeat 11, H...		Potri.003G114000 [exp]	0	1
AT4G22670		ATHIP1, TPR11	tetratricopeptide repeat 11, H...		Potri.001G118900 [exp]	2.44	0.6410
AT5G43500		ATARP9	actin-related protein 9 (.1.2)		Potri.010G073600 [exp]	8.83	0.6329
AT4G21220		AtLpxD2	lipid X D2, Trimeric LpxA-like...		Potri.004G039400 [exp]	10.58	0.6274
AT3G44990		AtXTH31, XTH31,...	XYLOGLUCAN ENDOTRANSGLUCOSYLAS...		Potri.009G006600 [exp]	10.72	0.6418	XTR8.1
AT4G27000		ATRBP45C	RNA-binding (RRM/RBD/RNP motif...		Potri.001G423400 [exp]	15.32	0.6271
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Potri.010G001400 [exp]	16.73	0.5950
					Potri.005G081700 [exp]	19.74	0.6199
AT2G31270		ATCDT1A, CDT1A,...	ARABIDOPSIS HOMOLOG OF YEAST C...		Potri.002G040100 [exp]	19.89	0.5995
AT2G35920			RNA helicase family protein (....		Potri.016G068900 [exp]	27.92	0.5925
AT4G23650		CDPK6, CPK3	Calcium dependent protein kina...		Potri.003G134000 [exp]	32.46	0.5580

Compare expression of checked genes

Potri.003G114000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.