Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12320 495 / 1e-171 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT4G12300 484 / 3e-167 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT4G12310 462 / 1e-158 CYP706A5 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1) AT5G44620 442 / 1e-150 CYP706A3 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1) AT4G12330 440 / 7e-150 CYP706A7 "cytochrome P450, family 706, subfamily A, polypeptide 7", cytochrome P450, family 706, subfamily A, polypeptide 7 (.1) AT4G22690 426 / 4e-144 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1) AT4G22710 425 / 4e-144 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT5G07990 327 / 9e-106 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G45560 320 / 2e-103 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT2G45550 309 / 5e-99 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G118400 [exp] 527 / 0 AT4G12300 429 / 9e-146 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.001G118500 [exp] 525 / 0 AT4G12320 627 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.005G045800 [exp] 522 / 0 AT4G12300 577 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.001G113900 [exp] 342 / 9e-112 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.009G069100 [exp] 322 / 3e-104 AT5G07990 512 / 1e-178 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G118200 [exp] 322 / 3e-104 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.007G084200 [exp] 320 / 1e-103 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.013G073300 [exp] 321 / 2e-103 AT5G07990 711 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.002G150100 [exp] 319 / 5e-103 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028914 [exp] 486 / 1e-167 AT4G12320 461 / 3e-158 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10004331 [exp] 479 / 8e-165 AT4G12300 449 / 1e-153 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032026 [exp] 470 / 1e-161 AT4G12300 464 / 1e-159 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032215 [exp] 466 / 8e-160 AT4G12300 462 / 1e-158 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032223 [exp] 463 / 4e-159 AT4G12300 621 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024578 [exp] 459 / 2e-157 AT4G12320 437 / 7e-149 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032214 [exp] 451 / 3e-154 AT4G12320 433 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032211 [exp] 448 / 4e-153 AT4G12320 432 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10024577 [exp] 444 / 9e-152 AT4G12300 444 / 3e-152 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032213 [exp] 440 / 4e-150 AT4G12300 453 / 1e-155 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.003G114400.1 pacid=42785371 polypeptide=Potri.003G114400.1.p locus=Potri.003G114400 ID=Potri.003G114400.1.v4.1 annot-version=v4.1 ATGGCTACGAATACAGATAATATGTCGTCGAGCACCATTTGTGGCCCGTGGTCTTGGTTTTGTAAAGGTGATCAAGATAATGAAGACATACTTTTGCCGA TAATATTGCTGGCTGTTTCTGTTACTATACTGGGTACCTGTTTATTCCAATGGGGATTCAAGAAGCAAAGAGAAACTGCTGATAAGCTGCCACCAGGACC CCGTGGCCTTCCCATAGTGGGCTACCTCCCTTTTTTAGGCCCCAATCTTCACCAATTGTTCATGGAATTGGCACAAACTTACGGTCCAATCTATAAGCTA TCAATCGGACGGAAGTTATGTGTCATAATAAGCTCTCCAGCACTGGTGAAAGAGGTTGTACGTGACCAAGACATAACATTTGCCAATAGAAATCCAACTA TTGCAGCAAAAACTTTCTCATACGGTGGAAAGGATATTGCATTTCAACCATATGGTCCCGAGTGGCGCATGCTGCGTAAAATATTGTTGCGGGAGATGCA AAGCAATGCAAATCTTGATGCGTTTTATTCTCTGAGGAGAAATAAGGTGAAGGAGAGTGTTAATGAAACGTACAGAAAAATTGGCAAACCTGTAAATATC GGGGAATTGGCATTTTCAACGGTGATCAGTATGATATCAGGCATGTTTTGGGGTGGTACTTTAGAAGTGGACACGGAGATTGATATTGGCTCCGAGTTTA GAGCGGCAGCCTCGGAACTCATTGAGATACTGGGAAAACCAAATGTTTCAGACTTCTTTCCAGTCCTTGCTAGATTTGATATACAAGGAATTGAGAGGAA AATGAAGAAGGCAACACAAAGGATCGAGAAAATCTATGATTTTGTCATGGATGAATGGATTGAAAAAGGCAGTGCAAGAGTTGAATCAGAGGCTAAAAAT GATCAAAGAAAGGACTTCATGCACTTCCTTTTGGGGTTCAAAGAACAAGACAGCAGGAGATCAATTTCCCGAGAACAAATTAAGGCTCTGCTTATGGACA TCGTTGTCGGTGGCACCGACACAACCTCAACTACGGTCGAATGGGCAATGGCAGAAATGATGCTACACCCAGAGGTGATGAAAAATGCCCAGAAAGAACT GACAGATGCGGTGGGCACCGACGAAATTGTTGAAGAACGCCACATTGACAAGTTACAGTTCTTGCACGCGGTTGTGAAGGAGACCTTGAGATTGCATCCG GTAGCGCCACTGTTACTACCCCGTTCCCCATCAAACACTTGCTTTGTTGGGGGATACACAATACCAAGGAATGCGAAAGTTTTTCTAAACGTTTGGGCTA TACATAGAGATCCTAAATTCTGGGACAATCCGTCAGAATTTCAACCGGAAAGGTTCCTGAGCGACGTTAGTAGACTGGATTATCTCGGAAATAATATGCA ATATCTTCCATTTGGGTCCGGTAGAAGGATCTGTGCAGGTCAGCCTCTGGGCGAAAGGATGCTCATGTATTGTTTGGCCACCTTCTTGCATATGTTCAAA TGGGAATTACCAAACGGTGAAAGGGCTGATACTTCAGAGAAGTTTGGGGTTGTTCTGGAGAAATCAACTCCTCTGATCGCCATTCCAACGCCCAGATTGT CCAACCTGAACCTCTACGCATAA
AA sequence Show only first row Show all	>Potri.003G114400.1 pacid=42785371 polypeptide=Potri.003G114400.1.p locus=Potri.003G114400 ID=Potri.003G114400.1.v4.1 annot-version=v4.1 MATNTDNMSSSTICGPWSWFCKGDQDNEDILLPIILLAVSVTILGTCLFQWGFKKQRETADKLPPGPRGLPIVGYLPFLGPNLHQLFMELAQTYGPIYKL SIGRKLCVIISSPALVKEVVRDQDITFANRNPTIAAKTFSYGGKDIAFQPYGPEWRMLRKILLREMQSNANLDAFYSLRRNKVKESVNETYRKIGKPVNI GELAFSTVISMISGMFWGGTLEVDTEIDIGSEFRAAASELIEILGKPNVSDFFPVLARFDIQGIERKMKKATQRIEKIYDFVMDEWIEKGSARVESEAKN DQRKDFMHFLLGFKEQDSRRSISREQIKALLMDIVVGGTDTTSTTVEWAMAEMMLHPEVMKNAQKELTDAVGTDEIVEERHIDKLQFLHAVVKETLRLHP VAPLLLPRSPSNTCFVGGYTIPRNAKVFLNVWAIHRDPKFWDNPSEFQPERFLSDVSRLDYLGNNMQYLPFGSGRRICAGQPLGERMLMYCLATFLHMFK WELPNGERADTSEKFGVVLEKSTPLIAIPTPRLSNLNLYA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Potri.003G114400 [exp]	0	1
AT5G03050			unknown protein		Potri.002G184600 [exp]	4.89	0.9190
AT5G02140			Pathogenesis-related thaumatin...		Potri.006G088100 [exp]	5.56	0.9508
AT3G16150		ASPGB1	asparaginase B1, N-terminal nu...		Potri.002G122900 [exp]	7.21	0.9488
AT1G07370		ATPCNA1, PCNA1	proliferating cellular nuclear...		Potri.010G193950 [exp]	9.48	0.9438
					Potri.003G217600 [exp]	11.31	0.9237
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Potri.002G030000 [exp]	13.41	0.9010	PtrTrxh1
AT4G01440			nodulin MtN21 /EamA-like trans...		Potri.002G182700 [exp]	15.09	0.8707
AT5G42200			RING/U-box superfamily protein...		Potri.002G017400 [exp]	18.00	0.9265
AT1G58170			Disease resistance-responsive ...		Potri.016G060900 [exp]	20.24	0.8925
AT1G77700			Pathogenesis-related thaumatin...		Potri.001G210400 [exp]	20.24	0.9370

Compare expression of checked genes

Potri.003G114400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.