Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12250 586 / 0 GAE5 UDP-D-glucuronate 4-epimerase 5 (.1) AT4G00110 585 / 0 GAE3 UDP-D-glucuronate 4-epimerase 3 (.1) AT1G02000 580 / 0 GAE2 UDP-D-glucuronate 4-epimerase 2 (.1) AT2G45310 580 / 0 GAE4 UDP-D-glucuronate 4-epimerase 4 (.1) AT3G23820 533 / 0 GAE6 UDP-D-glucuronate 4-epimerase 6 (.1) AT4G30440 504 / 3e-178 GAE1 UDP-D-glucuronate 4-epimerase 1 (.1) AT4G23920 97 / 5e-22 ATUGE2, UGE2 UDP-GLC 4-EPIMERASE 2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (.1) AT4G10960 94 / 4e-21 UGE5 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) AT1G12780 91 / 5e-20 ATUGE1, UGE1 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) AT1G63180 88 / 5e-19 UGE3 UDP-D-glucose/UDP-D-galactose 4-epimerase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G068400 [exp] 578 / 0 AT1G02000 714 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.002G146500 [exp] 576 / 0 AT1G02000 724 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.001G320000 [exp] 553 / 0 AT3G23820 714 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.017G059100 [exp] 551 / 0 AT3G23820 724 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.012G128200 [exp] 533 / 0 AT1G02000 544 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.018G100400 [exp] 499 / 3e-176 AT4G30440 771 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.006G178500 [exp] 499 / 4e-176 AT4G30440 757 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.002G116750 [exp] 171 / 1e-51 AT2G45310 209 / 6e-67 UDP-D-glucuronate 4-epimerase 4 (.1) Potri.003G123700 [exp] 104 / 1e-24 AT1G12780 641 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032391 [exp] 598 / 0 AT1G02000 620 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Lus10000787 [exp] 583 / 0 AT4G00110 731 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10030281 [exp] 579 / 0 AT4G00110 753 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10009288 [exp] 578 / 0 AT4G00110 704 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10015876 [exp] 576 / 0 AT4G00110 751 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10016640 [exp] 540 / 0 AT3G23820 746 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Lus10022552 [exp] 538 / 0 AT3G23820 742 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Lus10015496 [exp] 523 / 0 AT4G30440 764 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10008893 [exp] 519 / 0 AT4G30440 767 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10031127 [exp] 508 / 1e-179 AT4G00110 574 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01073 [poplar] [flax] 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family
Representative CDS sequence Show only first row Show all	>Potri.003G114600.3 pacid=42787031 polypeptide=Potri.003G114600.3.p locus=Potri.003G114600 ID=Potri.003G114600.3.v4.1 annot-version=v4.1 ATGTCACTCCTTGACACAACCCGACCTTCCACACCAGGCAAATTAAAACAAGAAAAATCATTACTTTACCTCCAAACCCACCGCCAACGTTCCCTCCGCC TCTACTCTTCACTCTCCAAATTCGCTCTCTCTTCTTTCTTCTTTCTCATTATATTCCTCTTCTTTTCCCTCCTTTCCTCTCCTTCTTCTCCCTCCAACCG CAGCAAAATCACCAACTCCCTCCCTGGAGGCTCTCAGTGGGAGAAAAAAGTCCTCAAATCGGCGCGTCCCAAATTACGCGCCGGCTTCACCGTATTTGTC ACCGGTGCCGCCGGTTTTGTAGGAACCCATGTCTCTGTTGCTCTGAAGCGGCGCGGCGATGGTGTTCTTGGACTTGACAATTTCAATCATTACTACGATG TTAATTTAAAACGAGACCGACAAAAGGTACTTGAACGATCAGGGGTTTTCGTTGTTGAAGGAGATATTAATGATGTTAAGTTGTTGCAGAAACTTTTTGA TGTTGTTTATTTTACTCATGTTATGCATTTAGCTGCTCAAGCGGGGGTGCGTTATGCGATGCAGAATCCTAAGTCTTATGTGAATAGTAATATTGCTGGG TTTGTTAACTTGCTCGAGGTTTGTAAATCAGCTGATCCACAGCCTGCCATTGTGTGGGCGTCATCGAGTTCTGTCTATGGGCTTAATAAAAGAGTACCCT TTTCGGAGAAGGATAGGACTGATCAGCCTGCGAGTTTATATGCAGCGACTAAGAAGGCAGGTGAAGCGCTTGCGCATAGTTATAATCATATTTATGGTCT TTCGATTACTGGGTTGCGGTTTTTTACAGTTTACGGGCCTTGGGGAAGGCCGGATATGGCGTATTTCTTTTTTACTAAGAATATTTTGAAGGGGAAGGAG ATTGGTGTATATGAGACTGCTGATGGAAAGAGCGTGGCTAGGGATTTTACTTACATTGATGACATTGTGAAGGGGTGTCTAGCAGCGTTGGATACAGCAA AAAATAGTACTGGGAGCGGAGGGAAGAAAAGGGGACCAGCGCAATTGAGGGTGTTCAATTTGGGGAATACATCGCCGGTGCCTGTGAGTAAGCTTGTGAG CATATTGGAGAAACTTTTGAAGGTAAAGGCTAAGAAGAAGGTGTTGCCGTTACCTAGAAATGGGGATGTGGAGTTTACGCATGCCAATATTAGTTCTGCC CAGAGGGAGCTTGGATATATGCCAACAACAGATTTGGAGACGGGGCTCAAGAAGTTTGTGAGATGGTATACTGGTTATTTTTCAGGGTCAAAGAAGAAAT CCTGGTGA
AA sequence Show only first row Show all	>Potri.003G114600.3 pacid=42787031 polypeptide=Potri.003G114600.3.p locus=Potri.003G114600 ID=Potri.003G114600.3.v4.1 annot-version=v4.1 MSLLDTTRPSTPGKLKQEKSLLYLQTHRQRSLRLYSSLSKFALSSFFFLIIFLFFSLLSSPSSPSNRSKITNSLPGGSQWEKKVLKSARPKLRAGFTVFV TGAAGFVGTHVSVALKRRGDGVLGLDNFNHYYDVNLKRDRQKVLERSGVFVVEGDINDVKLLQKLFDVVYFTHVMHLAAQAGVRYAMQNPKSYVNSNIAG FVNLLEVCKSADPQPAIVWASSSSVYGLNKRVPFSEKDRTDQPASLYAATKKAGEALAHSYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTKNILKGKE IGVYETADGKSVARDFTYIDDIVKGCLAALDTAKNSTGSGGKKRGPAQLRVFNLGNTSPVPVSKLVSILEKLLKVKAKKKVLPLPRNGDVEFTHANISSA QRELGYMPTTDLETGLKKFVRWYTGYFSGSKKKSW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12250		GAE5	UDP-D-glucuronate 4-epimerase ...		Potri.003G114600 [exp]	0	1
AT2G16890			UDP-Glycosyltransferase superf...		Potri.001G348100 [exp]	2.64	0.9528
AT1G34300			lectin protein kinase family p...		Potri.013G115800 [exp]	3.74	0.9491
AT1G20696		NFD3, NFD03, HM...	high mobility group B3 (.1.2.3...		Potri.002G009000 [exp]	6.16	0.9201	HMGB901,Pt-HMGB3.2
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Potri.007G043500 [exp]	6.70	0.9446
AT5G65520			Tetratricopeptide repeat (TPR)...		Potri.002G111300 [exp]	8.00	0.9208
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Potri.016G068700 [exp]	8.12	0.9252
AT4G11570			Haloacid dehalogenase-like hyd...		Potri.001G104366 [exp]	9.89	0.9230
AT4G36550			ARM repeat superfamily protein...		Potri.005G228100 [exp]	10.19	0.9314
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Potri.013G095500 [exp]	10.39	0.9392
AT4G18010		AT5PTASE2, IP5P...	INOSITOL\(1,4,5\)P3 5-PHOSPHAT...		Potri.003G088300 [exp]	12.64	0.9335

Compare expression of checked genes

Potri.003G114600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.