Plant FIBer expression Database

Potri.003G114700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G12240 424 / 6e-148 C2H2ZnF zinc finger (C2H2 type) family protein (.1)
AT5G52010 216 / 4e-66 C2H2ZnF C2H2-like zinc finger protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G025100
[exp]
234 / 5e-73 AT5G52010 441 / 5e-154 C2H2-like zinc finger protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032208
[exp]
456 / 2e-160 AT4G12240 402 / 5e-140 zinc finger (C2H2 type) family protein (.1)
Lus10024570
[exp]
280 / 4e-93 AT4G12240 234 / 3e-76 zinc finger (C2H2 type) family protein (.1)
Lus10024807
[exp]
217 / 3e-66 AT5G52010 456 / 6e-160 C2H2-like zinc finger protein (.1)
Lus10018728
[exp]
184 / 5e-55 AT5G52010 375 / 5e-130 C2H2-like zinc finger protein (.1)
Lus10018729
[exp]
71 / 3e-14 AT5G52010 136 / 2e-38 C2H2-like zinc finger protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0280 PIN PF01936 NYN NYN domain
Representative CDS sequence
>Potri.003G114700.1 pacid=42787497 polypeptide=Potri.003G114700.1.p locus=Potri.003G114700 ID=Potri.003G114700.1.v4.1 annot-version=v4.1
ATGAAAAAGTTCCAGTTTTTAAGACTCTCGGTTGCTTTGTATCAACAAACACCTCTGCATATGCTCATGTTTCTCAAATTTCGAAACTTTTCCCATTCAA
TAAAATCTACACGGCTAAAAAACCAAAACCCGTGTTTTGAATTGTTTAGATTCTGCCATTTTGATTCAAAACTGGGTTTGGGTTCTTCAAGCCTAACGCC
GACTTTATCACCTCAGAAACCCCAAAACAATGTTGCAATTTTCTGGGATTTGGACAACAAACCCCCCAAAACTGTCTCTCCATTTGAGGCTGCTATTAAG
CTTAAAACTGCTGTGTGCTCATTTGGGTTTGTTAAATACATGGTGGCTTACGCTAATAGGCATGCATTTAGTTACGTGCCTCAAGTTGTGAGAGAGGAAA
GAAAGCAGAGAAAGTCGTTGAATCAGTTAGAAAATAAGGGTGTGATTAAGCCTGTAGAATCTTATTTATGCAGAGTTTGTGGAAGGAACTTTTATAATAA
TGAGAAGTTTATTAATCATTTTAAGCAAATTCATGAGCGTGAGCAACAAAAGAGGTTGAATCAGATAGAATCAGCAAGAGGGAAGAGGAGAGTTATGTTA
GTGGGTAAGTATGCAATGAAGATGCAGAAGTATAAGAATGCTGCTAGGGATATTTTGACTCCAAAAGTAGGTTATGGTTTGGCTGATGAGTTGAAAAGGG
CTGGTTTTTGGGTTAGGACTGTTTTGGATAAGCCACAGGCAGCGGATGTGGCATTGAAAGATCATATGGTAGATATGATGGATAAGAGGAGAGCTGAGTG
TTTCGTGCTTGTATCAGATGATTCGGATTTTGTTCATGTTTTGAAGGAGGCTAAATCTAGATGTTTAAAGACGGTTGTGGTAGGGGATGTTAATGATGGG
GCATTGAAGAGGGTTGCCGATGCAGGATTTTCTTGGCAGGAAATTTTGATGGGGAAGGCTAAGAAGGATGCAGAAACGGTTGTGGGACGGTGGAAGGACC
GTGATGTCTTGAAGAGATTGGAGTGGATATATGATCCGGAGGTAGAGAAAAACTTGCATGGCATGGTTTATGAGTTTGATAATCATGAGAGCAAGGATGA
ATGTGATGGCAATGATAGTGAGGATGGAGATATTGATAATATTCTTGATGGTGATGATGTTGGTTGTTTGCAAAAGGAAGATGCCAGAGGTTGGTGGGAG
CTGGACTCTAATCCTGAGGTCACTTCTTCACAATCATGCTGA
AA sequence
>Potri.003G114700.1 pacid=42787497 polypeptide=Potri.003G114700.1.p locus=Potri.003G114700 ID=Potri.003G114700.1.v4.1 annot-version=v4.1
MKKFQFLRLSVALYQQTPLHMLMFLKFRNFSHSIKSTRLKNQNPCFELFRFCHFDSKLGLGSSSLTPTLSPQKPQNNVAIFWDLDNKPPKTVSPFEAAIK
LKTAVCSFGFVKYMVAYANRHAFSYVPQVVREERKQRKSLNQLENKGVIKPVESYLCRVCGRNFYNNEKFINHFKQIHEREQQKRLNQIESARGKRRVML
VGKYAMKMQKYKNAARDILTPKVGYGLADELKRAGFWVRTVLDKPQAADVALKDHMVDMMDKRRAECFVLVSDDSDFVHVLKEAKSRCLKTVVVGDVNDG
ALKRVADAGFSWQEILMGKAKKDAETVVGRWKDRDVLKRLEWIYDPEVEKNLHGMVYEFDNHESKDECDGNDSEDGDIDNILDGDDVGCLQKEDARGWWE
LDSNPEVTSSQSC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G12240 C2H2ZnF zinc finger (C2H2 type) family... Potri.003G114700
[exp]
0 1
AT1G03950 VPS2.3 vacuolar protein sorting-assoc... Potri.002G035900
[exp]
2.23 0.8749
AT5G41960 unknown protein Potri.003G146100
[exp]
3.87 0.8666
AT3G07560 APM2, PEX13 ABERRANT PEROXISOME MORPHOLOGY... Potri.014G197200
[exp]
5.47 0.8614
AT3G46580 MBD05, MDB5, MD... METHYL-CPG-BINDING DOMAIN PROT... Potri.009G031100
[exp]
5.65 0.8326 MBD5.2,MBD904
AT1G57790 F-box family protein (.1) Potri.006G212600
[exp]
7.74 0.8579
AT5G24810 ABC1 family protein (.1.2) Potri.018G003400
[exp]
9.59 0.8681
AT3G12130 C3HZnF KH domain-containing protein /... Potri.006G191900
[exp]
11.83 0.8620
AT1G13360 unknown protein Potri.015G054300
[exp]
12.00 0.8410
AT1G71800 CSTF64 cleavage stimulating factor 64... Potri.002G061200
[exp]
12.64 0.8521
AT5G10270 CDKC;1 cyclin-dependent kinase C;1 (.... Potri.012G003700
[exp]
12.96 0.8241 CDC2.6

Potri.003G114700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.