Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12230 543 / 0 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G118000 [exp] 613 / 0 AT4G12230 551 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032207 [exp] 528 / 0 AT4G12230 538 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10024569 [exp] 525 / 0 AT4G12230 537 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10031137 [exp] 46 / 4e-05 AT4G25290 778 / 0.0 DNA photolyases;DNA photolyases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00561 [poplar] [flax] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Potri.003G114900.1 pacid=42785844 polypeptide=Potri.003G114900.1.p locus=Potri.003G114900 ID=Potri.003G114900.1.v4.1 annot-version=v4.1 ATGAAAGGCGTCTTCTCGGCGCCCGGTGATTATATTCATTTCAAGTCGCAAGTCCCTCTCCACAAGATTCCCATCGGGACAAAGCAGTGGAGATACTATG ATTTTGGTCCCAAAGCGGTTCCCCCACTTATTTGTCTTCCTGGAATAGCAGGGACAGCAGATGTTTACTATAAGCAGATCATGTCATTGTCCATGAAGGG GTACCGAGTTATTTCTGTTGATATTCCACGCGTGTGGAATCATCATGAGTGGATCCAAGCATTTGAAAAGTTTTTGGATGTCATCGATGTTCATCATATA CATCTTTATGGAACATCTTTAGGGGGCTTCTTAGCACAGCTTTTTGCACAGCATCGTCCAAGGCGAGTGAGATCATTGATACTATCAAACACCTTTTTGG AGACTCGCAGTTTTGCATCTGCCATGCCGTGGGCTCCTGTTGTAAGTTGGACCCCATCTTTTCTTCTGAAAAGGTATGTCTTAACTGGAATTCGCGATGG TCCTCATGAACCATTTATTGCAGATTCAGTGGATTTTGTTGTTTCTCAGGTTGAAACGCTTTCGAGAGATGACTTGGCCTCCAGGTTGACTCTGAATGTT GATGCTGCTTCAGTTGGATCTCTTCTACTTTCAGATTCATGTATTACTATAATGGATACTAATGATTACTGTGCAACTCCTCAACAACTCAAAGATCAGC TGAGTGATAGATATCCTGAAGCACGGTGTGCTCACTTGAAGAGTGGAGGTGACTTTCCATTTCTTTCACGCCCAGATGAAGTTAACTTGCATCTTCAGCT ACACCTGCGACGAGTTGGGTTAGAAGCCCAGCCAGACATGGTCAGGGGCATCCCAAAGGATGGCGCTGGTGGGAGCCATGGTGAAGAGAAAGATGGTAAA GAAGATCCAGATGATGAGCCCAAAGATGATGAAGGAAGCTCTGAAGGACAATCGAAGGAAAATCAGTTGTGTCCAGCTCCGGAAAGCTCAGAATCACATA CCTCACACGACCAGCCTCTAAGTAATGCACAGCTTTGCCTCATTGCTCCGGGAGACACAATTCATCTCTGTTTTTTGAGAAAACAACACGTCATAGCTAT TGAAATCTTTTTCCAATATACTCTGGAAACTTTTTTACGACTTGCTTCCCTCTCGAGGGAAGTTGATGTACATCACTTCATATTTTGGGCAAAAACGCAG ACGAATGGTGTGAAATAG
AA sequence Show only first row Show all	>Potri.003G114900.1 pacid=42785844 polypeptide=Potri.003G114900.1.p locus=Potri.003G114900 ID=Potri.003G114900.1.v4.1 annot-version=v4.1 MKGVFSAPGDYIHFKSQVPLHKIPIGTKQWRYYDFGPKAVPPLICLPGIAGTADVYYKQIMSLSMKGYRVISVDIPRVWNHHEWIQAFEKFLDVIDVHHI HLYGTSLGGFLAQLFAQHRPRRVRSLILSNTFLETRSFASAMPWAPVVSWTPSFLLKRYVLTGIRDGPHEPFIADSVDFVVSQVETLSRDDLASRLTLNV DAASVGSLLLSDSCITIMDTNDYCATPQQLKDQLSDRYPEARCAHLKSGGDFPFLSRPDEVNLHLQLHLRRVGLEAQPDMVRGIPKDGAGGSHGEEKDGK EDPDDEPKDDEGSSEGQSKENQLCPAPESSESHTSHDQPLSNAQLCLIAPGDTIHLCFLRKQHVIAIEIFFQYTLETFLRLASLSREVDVHHFIFWAKTQ TNGVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12230			alpha/beta-Hydrolases superfam...		Potri.003G114900 [exp]	0	1
AT5G35520		MIS12, ATMIS12	MIS12 HOMOLOGUE, ARABIDOPSIS M...		Potri.015G055500 [exp]	9.94	0.5405
AT2G33980		ATNUDT22	nudix hydrolase homolog 22 (.1...		Potri.004G053300 [exp]	40.97	0.4735
AT5G25760		PEX4, UBC21	ubiquitin-conjugating enzyme 2...		Potri.006G240900 [exp]	54.25	0.4854
AT5G59160		PPO, TOPP2	PROTOPORPHYRINOGEN OXIDASE, ty...		Potri.009G037700 [exp]	63.20	0.4579	Pt-TOPP1.1
AT4G03960		AtPFA-DSP4	plant and fungi atypical dual-...		Potri.011G021100 [exp]	82.61	0.4732
AT1G09740			Adenine nucleotide alpha hydro...		Potri.002G104700 [exp]	101.83	0.4510

Compare expression of checked genes

Potri.003G114900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.