Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12310 266 / 3e-93 Calcium-binding EF-hand family protein (.1) AT1G62820 258 / 4e-90 Calcium-binding EF-hand family protein (.1) AT5G21274 161 / 1e-51 ACAM-6, CAM6 calmodulin 6 (.1) AT3G43810 161 / 1e-51 CAM7 calmodulin 7 (.1) AT3G56800 160 / 4e-51 ACAM-3, CAM3 calmodulin 3 (.1) AT2G27030 160 / 4e-51 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT2G41110 160 / 4e-51 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT5G37780 159 / 7e-51 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT1G66410 159 / 7e-51 ACAM-4, CAM4 calmodulin 4 (.1.2) AT4G14640 131 / 7e-40 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G117900 [exp] 290 / 9e-103 AT1G12310 266 / 5e-93 Calcium-binding EF-hand family protein (.1) Potri.016G024700 [exp] 161 / 1e-51 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.009G021500 [exp] 161 / 1e-51 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.006G026700 [exp] 161 / 1e-51 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.012G041000 [exp] 159 / 1e-50 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.001G222200 [exp] 159 / 2e-50 AT2G27030 304 / 6e-107 calmodulin 5 (.1.2.3) Potri.015G032600 [exp] 157 / 4e-50 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.010G080900 [exp] 131 / 1e-39 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.008G159300 [exp] 129 / 6e-39 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032205 [exp] 273 / 8e-96 AT1G12310 263 / 7e-92 Calcium-binding EF-hand family protein (.1) Lus10024567 [exp] 272 / 2e-95 AT1G12310 261 / 2e-91 Calcium-binding EF-hand family protein (.1) Lus10028915 [exp] 265 / 1e-92 AT1G12310 258 / 7e-90 Calcium-binding EF-hand family protein (.1) Lus10004332 [exp] 262 / 2e-91 AT1G12310 258 / 4e-90 Calcium-binding EF-hand family protein (.1) Lus10027283 [exp] 161 / 2e-51 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10038981 [exp] 161 / 2e-51 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10037423 [exp] 161 / 2e-51 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10041288 [exp] 161 / 2e-51 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10022589 [exp] 129 / 6e-39 AT3G43810 255 / 2e-88 calmodulin 7 (.1) Lus10039391 [exp] 129 / 7e-39 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13405 [poplar] [flax] EF-hand_6 EF-hand domain CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.003G115000.1 pacid=42786511 polypeptide=Potri.003G115000.1.p locus=Potri.003G115000 ID=Potri.003G115000.1.v4.1 annot-version=v4.1 ATGGGCAAGGATTTGAGCGACGATCAGGTGTCATCAATGAAAGAAGCGTTCACGCTCTTCGACACAGACGGTGACGGAAAGATAGCCCCATCGGAATTGG GGATCCTTATGAGATCTCTCGGTGGAAACCCGACCCAAGCTCAATTAAAATCCATAATCGCCGAGGAGAACTTGACGGCACCGTTTGATTTCCCTAGATT CCTTGATTTAATGGCAAAGCACATGAAAGCTGAGCCGTTTGATCGGCAGTTGCGTGATGCATTCAAAGTGCTTGATAAGGATAACACAGGGTTTGTTTCT GTTGCGGATCTGCGTCATATTTTGACCAGTATTGGAGAGAAATTGGAGGTGGCGGAGTTCGATGAGTGGATCCGAGAAGTTGATGTCGGGTCCGATGGGA GGATCCGTTACGATGATTTTATTGCTAGAATGGTTGCTAAGTGA
AA sequence Show only first row Show all	>Potri.003G115000.1 pacid=42786511 polypeptide=Potri.003G115000.1.p locus=Potri.003G115000 ID=Potri.003G115000.1.v4.1 annot-version=v4.1 MGKDLSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIAEENLTAPFDFPRFLDLMAKHMKAEPFDRQLRDAFKVLDKDNTGFVS VADLRHILTSIGEKLEVAEFDEWIREVDVGSDGRIRYDDFIARMVAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12310			Calcium-binding EF-hand family...		Potri.003G115000 [exp]	0	1
AT4G12650			Endomembrane protein 70 protei...		Potri.002G217300 [exp]	2.00	0.9554
AT3G44150			unknown protein		Potri.016G068000 [exp]	4.00	0.9536
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Potri.001G222200 [exp]	4.47	0.9439	Pt-ACCAL.3
AT3G54120			Reticulon family protein (.1)		Potri.016G110200 [exp]	4.89	0.9460
AT2G47320			Cyclophilin-like peptidyl-prol...		Potri.002G194250 [exp]	5.74	0.9369
AT3G19260		LOH2, LAG1 HOMO...	LONGEVITY ASSURANCE GENE1 HOMO...		Potri.009G101800 [exp]	7.48	0.9287
AT5G16730			Plant protein of unknown funct...		Potri.013G079000 [exp]	8.00	0.9276
AT2G17800		ARAC1, ATGP2, A...	RHO-RELATED GTPASES FROM PLANT...		Potri.005G110700 [exp]	8.66	0.9224	Pt-RHO1.2
AT5G66060			2-oxoglutarate (2OG) and Fe(II...		Potri.005G108000 [exp]	8.77	0.9411
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Potri.019G053500 [exp]	9.59	0.9112

Compare expression of checked genes

Potri.003G115000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.