Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22730 788 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G51560 695 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G45340 660 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G67510 215 / 2e-60 Leucine-rich repeat protein kinase family protein (.1) AT4G20140 216 / 2e-59 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G22130 208 / 5e-58 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT1G60800 205 / 2e-57 NIK3 NSP-interacting kinase 3 (.1) AT5G16000 201 / 7e-56 NIK1 NSP-interacting kinase 1 (.1) AT1G78980 201 / 1e-55 SRF5 STRUBBELIG-receptor family 5 (.1) AT3G25560 193 / 4e-53 NIK2 NSP-interacting kinase 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G117800 [exp] 1070 / 0 AT4G22730 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G130100 [exp] 758 / 0 AT5G51560 940 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G147000 [exp] 751 / 0 AT2G45340 808 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G068700 [exp] 745 / 0 AT2G45340 831 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G128700 [exp] 736 / 0 AT5G51560 906 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G176900 [exp] 219 / 8e-62 AT1G67510 923 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G108200 [exp] 216 / 3e-61 AT5G16000 1006 / 0.0 NSP-interacting kinase 1 (.1) Potri.013G091000 [exp] 215 / 2e-59 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G123400 [exp] 212 / 4e-58 AT4G08850 708 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004333 [exp] 798 / 0 AT4G22730 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10028916 [exp] 773 / 0 AT4G22730 749 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031123 [exp] 686 / 0 AT5G51560 855 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031703 [exp] 685 / 0 AT5G51560 851 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004032 [exp] 602 / 0 AT2G45340 747 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030279 [exp] 518 / 1e-176 AT2G45340 648 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030898 [exp] 215 / 5e-61 AT1G60800 931 / 0.0 NSP-interacting kinase 3 (.1) Lus10030591 [exp] 214 / 7e-61 AT1G60800 929 / 0.0 NSP-interacting kinase 3 (.1) Lus10019963 [exp] 211 / 6e-59 AT2G23950 907 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033104 [exp] 194 / 1e-53 AT5G62710 934 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.003G115100.1 pacid=42787112 polypeptide=Potri.003G115100.1.p locus=Potri.003G115100 ID=Potri.003G115100.1.v4.1 annot-version=v4.1 ATGGTTTCTTTTTGTTCTCTCTCTTCTTTCATTCTATCTCTTGCACTGTTAACTCTACAACAAGCTTCTGGAAACAATTCAGAGCTTCAAACTTTAATGG AGCTAAAGTCTGCTTTAGACCCAACGAATAAGTATTTAAAGTCATGGGCTAGTGATGGGGATCCATGCAGTGGCTTATTTGAGGGTGTGGCGTGCAATGA GCATGGTAATGTGGCTAACATTTCATTGCAGGGAAAGGGACTGTCCGGTACATTATCCCCTGCAGTGGCAGAACTGAAAAGCTTGTCTGGTCTGTACTTG CATTATAATTCATTGTCTGGAGAGATACCAAAGGAGATTGCTGATTTGACTGAGCTATCAGATCTTTATCTCAATGTGAATAATATTTCTGGGAGTATTC CTCCTGAGATGGGTAACATGGCTTCTCTACAAGTTTTAGAGCTATGTTGTAACCAGCTCGCAGGGAACATACCACCAGAGATGGGGTCCTTGAAGAGGCT AAGCGTCCTAGCATTGCAGTATAATAGACTAACTGATCAAATTCCTGCCAGCTTAGGGACCTTGGGAATGTTGAAAATGCTTTATATGAGTTTTAATCAC TTGTCAGGGTCAATTCCTCAAGGAATAGCTAACATTCCACAGATGGAAGTGCTGGATGTCCGAAACAATTCTCTTTCTGGAATTGTCCCTTCTGCTTTGA AGAGATTAAATGGAGGGTTTCAATTCGAGAACAACCCAGGTTTATGTGGAACTGGATTTCCTCTATTGAGAGCTTGCAATGCTGTTTTTGATATCAACCA AGTTGGCCCCTTGGGACCTATTGCAAATAATACTGCTCAAAAAGTTATCCCCCAGTCTGAAATTCTTCAGGCACATTGCAACCTAACCCACTGTTCAAAT TCATCAAAACTTCCACAGGCTGCCATTGTTGCTGGGGTTATTACAGTCACCGTCACGTTGATTGGTGCTGGATTTCTGATCATTTTCCTCTATCGCCGGA AGAAACAAAAGATTGGGAATACATCTGCTTTTTCTGAAGGGCGGCTAAGCACTCACCAGGCTAAGGAGTTCCACAGGGCTGGTGCCTCTCCACTTGTAAG TCTTGAGTATTCTAATGGGTGGGACCCATTAGGTGACAGTCGAAATGGCATTGAAATCTCTGGAGAGCATCTAAATAACTTTAGATTCAACCTGGAGGAG ATCGAGTCTGCTACCCGGTGCTTTTCTGAGGTGAATGTACTGGGAAAGAGCAGCTTCTCAACTGTCTACAAAGGAATTCTCAGAGATGGTTCTCTTGTAG CTATTAGGAGCATCAATTTAACCAGCTGTAAACCTGAAGAAGCTGAGTTTGTGAAAGGTTTAGACTTGCTAACATCCTTGAGACATAATAACCTCACTCG GCTGCGAGGTTTTTGCTGCTCCAGGGGCAGGGGTGAATGTTTTCTTATCTATGATTTTGCTCCCAGGGGAGATCTGTCAAGATATCTTGATTTAGAAGAT GGAAGTAATCAAGTTCTTGACTGGTCTACAAGAGTTTATATTATCAATGGCATAGCAAAAGGTATTAGATATTTGCACAGCAGTGAAGAGAACAAACCTG TCATGATTCATCGAAGAATATCTGTTGAGAAAGTCCTCCTTGACCAGCAGTTCAACCCATTAATCGCAGACTCTGGCCTCGCCAAGCTTCTAGCAGATGA CGTTGTCTTCTCAACTATAAAAATCAGTGCTGCCATGGGATACCTATCTCCAGAATATGTAACCACAGGGCTTTTTACGGAAAAGAGTGATATATATGCA TTTGGAGTGATCATCCTCCAAATCCTATCCGGTAAACAGATGCTGTACTCCAAATCAATGCTATTGGCAGCTGCATGTTGCATGTACGATGACTTCGTTG ACACAAGTCTCCAAGGAAACTTCTCTGAATCTGAGGCAGCTAAGCTGGCAAAAATTGCACTGACGAGCTCCCTGACCATAGGCCGACCATGA
AA sequence Show only first row Show all	>Potri.003G115100.1 pacid=42787112 polypeptide=Potri.003G115100.1.p locus=Potri.003G115100 ID=Potri.003G115100.1.v4.1 annot-version=v4.1 MVSFCSLSSFILSLALLTLQQASGNNSELQTLMELKSALDPTNKYLKSWASDGDPCSGLFEGVACNEHGNVANISLQGKGLSGTLSPAVAELKSLSGLYL HYNSLSGEIPKEIADLTELSDLYLNVNNISGSIPPEMGNMASLQVLELCCNQLAGNIPPEMGSLKRLSVLALQYNRLTDQIPASLGTLGMLKMLYMSFNH LSGSIPQGIANIPQMEVLDVRNNSLSGIVPSALKRLNGGFQFENNPGLCGTGFPLLRACNAVFDINQVGPLGPIANNTAQKVIPQSEILQAHCNLTHCSN SSKLPQAAIVAGVITVTVTLIGAGFLIIFLYRRKKQKIGNTSAFSEGRLSTHQAKEFHRAGASPLVSLEYSNGWDPLGDSRNGIEISGEHLNNFRFNLEE IESATRCFSEVNVLGKSSFSTVYKGILRDGSLVAIRSINLTSCKPEEAEFVKGLDLLTSLRHNNLTRLRGFCCSRGRGECFLIYDFAPRGDLSRYLDLED GSNQVLDWSTRVYIINGIAKGIRYLHSSEENKPVMIHRRISVEKVLLDQQFNPLIADSGLAKLLADDVVFSTIKISAAMGYLSPEYVTTGLFTEKSDIYA FGVIILQILSGKQMLYSKSMLLAAACCMYDDFVDTSLQGNFSESEAAKLAKIALTSSLTIGRP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22730			Leucine-rich repeat protein ki...		Potri.003G115100 [exp]	0	1
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Potri.002G114800 [exp]	2.44	0.8778
AT1G15080		ATLPP2, LPP2, A...	PHOSPHATIDIC ACID PHOSPHATASE ...		Potri.010G119300 [exp]	2.64	0.8044	Pt-PAP2.2
AT4G18820			AAA-type ATPase family protein...		Potri.011G071300 [exp]	4.89	0.7950
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Potri.012G079500 [exp]	7.48	0.8037
AT3G07340	bHLH	bHLH062	basic helix-loop-helix (bHLH) ...		Potri.014G148900 [exp]	8.18	0.7305
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Potri.017G108000 [exp]	9.48	0.8334
AT4G37250			Leucine-rich repeat protein ki...		Potri.005G142300 [exp]	13.41	0.8411
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.015G003500 [exp]	13.67	0.7801
AT1G75060			unknown protein		Potri.001G101600 [exp]	16.43	0.7618
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145578 [exp]	16.73	0.7898

Compare expression of checked genes

Potri.003G115100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.