Plant FIBer expression Database

Potri.003G115300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G62850 258 / 2e-87 Class I peptide chain release factor (.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G117500
[exp]
348 / 3e-123 AT1G62850 306 / 3e-106 Class I peptide chain release factor (.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024564
[exp]
259 / 2e-87 AT1G62850 283 / 1e-96 Class I peptide chain release factor (.2.3)
Lus10032202
[exp]
227 / 8e-76 AT1G62850 230 / 3e-77 Class I peptide chain release factor (.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0337 RF PF00472 RF-1 RF-1 domain
Representative CDS sequence
>Potri.003G115300.1 pacid=42785753 polypeptide=Potri.003G115300.1.p locus=Potri.003G115300 ID=Potri.003G115300.1.v4.1 annot-version=v4.1
ATGGCAGTTATCAGAACCTCAACCAACATGATCCTCAAACAAGTTTTCCTCGATAATCTGCTAATACCGCCAGTGCCCTCCTTTTCTGTTAGTAGAACAT
TAGGCAACTTGCGCTGGGCTAACCTTAAAGTACCAAATCGGGAAATCAGCTTCAGCCGGATTAAATGTGCGGGTTCCGATGACAAGAAGGTATCCTCTCG
GCTGTCTCAGGTTCAACAGTTACTGCAAGAGGCTGAGGAGCGTGCCAGCGCCGCTGGAAACGAGCCGCCTCCAAAAATTACACTTGACCATGTTACTGTG
AGTTTTGCAAGAAGTGGTGGGCCTGGCGGTCAGAACGTAAACAAAGTTAACACCAAGGTGGACATGCGCTTCAATGTTAAAAACGCATATTGGCTAAGTG
AAAGGATCAGAGAGAGGATCATGCAAATGGAAAAGAATCGCATTAACAAGGATGGCGAGATTGTGATTTCTTCGACAAAGACTAGAACACAGAAGGGCAA
CATTGATGATGCTTTGGCAAAGCTACAGGCAATCATTGATGTGGCTTCTTATGTTCCACCACCTCCTTCTGAAGAGCAAAAGAAGAAAATTGCCAAGCTG
GCCGCTATCGGAGAACAGAAGCGACTGAAAAGTAAGAAAGCCCTTTCAGACAAGAAGGCTTTTAGAAGAAGTCGGGACAGTTGGGACTAA
AA sequence
>Potri.003G115300.1 pacid=42785753 polypeptide=Potri.003G115300.1.p locus=Potri.003G115300 ID=Potri.003G115300.1.v4.1 annot-version=v4.1
MAVIRTSTNMILKQVFLDNLLIPPVPSFSVSRTLGNLRWANLKVPNREISFSRIKCAGSDDKKVSSRLSQVQQLLQEAEERASAAGNEPPPKITLDHVTV
SFARSGGPGGQNVNKVNTKVDMRFNVKNAYWLSERIRERIMQMEKNRINKDGEIVISSTKTRTQKGNIDDALAKLQAIIDVASYVPPPPSEEQKKKIAKL
AAIGEQKRLKSKKALSDKKAFRRSRDSWD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G62850 Class I peptide chain release ... Potri.003G115300
[exp]
0 1
AT4G38970 FBA2 fructose-bisphosphate aldolase... Potri.004G162400
[exp]
3.16 0.9565
AT3G21690 MATE efflux family protein (.1... Potri.011G002600
[exp]
5.83 0.9533
AT4G38970 FBA2 fructose-bisphosphate aldolase... Potri.007G015500
[exp]
7.21 0.9088
AT1G42970 GAPB glyceraldehyde-3-phosphate deh... Potri.005G254100
[exp]
10.95 0.9475 Pt-GAPB.2
AT1G74640 alpha/beta-Hydrolases superfam... Potri.017G115100
[exp]
15.49 0.9215
AT2G36895 unknown protein Potri.016G099300
[exp]
20.14 0.9085
AT4G03520 ATHM2 Thioredoxin superfamily protei... Potri.002G073000
[exp]
20.39 0.9337
AT5G38660 APE1 acclimation of photosynthesis ... Potri.017G112700
[exp]
21.90 0.9261
AT1G44575 CP22, PSBS, NPQ... PHOTOSYSTEM II SUBUNIT S, NONP... Potri.002G083500
[exp]
32.71 0.9297 NPQ4.1
AT4G38970 FBA2 fructose-bisphosphate aldolase... Potri.009G124100
[exp]
36.37 0.9249

Potri.003G115300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.