Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22740 211 / 1e-65 glycine-rich protein (.1.2) AT2G45380 167 / 1e-47 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G117400 [exp] 483 / 6e-172 AT4G22740 209 / 3e-64 glycine-rich protein (.1.2) Potri.014G069100 [exp] 199 / 1e-61 AT2G45380 198 / 1e-59 unknown protein Potri.002G147150 [exp] 76 / 2e-16 AT2G45380 68 / 1e-13 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024563 [exp] 246 / 1e-79 AT4G22740 221 / 9e-70 glycine-rich protein (.1.2) Lus10032201 [exp] 212 / 4e-66 AT4G22740 187 / 1e-56 glycine-rich protein (.1.2) Lus10015873 [exp] 160 / 9e-47 AT2G45380 212 / 2e-65 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10248 [poplar] [flax] Mlf1IP Myelodysplasia-myeloid leukemia factor 1-interacting protein
Representative CDS sequence Show only first row Show all	>Potri.003G115400.2 pacid=42787432 polypeptide=Potri.003G115400.2.p locus=Potri.003G115400 ID=Potri.003G115400.2.v4.1 annot-version=v4.1 ATGCAAGGAGGCAGGGGTAACAGAGATCCTTTCTTTGGTAATGGTGGCCCTTTTGGTGGTTTTGGGAGCCAGAGAAGTCTGCTCTCTGGTTTTTTCGGTG GAAGGGATCCATTTGATGACCCGTTCTTCACGCGTCCGTTTGGAGGTCTGTTCGAGTCGACTTTCTTTGGTTCCAGTGGAAATCCTTTCCCTAATATGCA TCCATCTCCCTTTGACAACATGCATCCTTCTGGATATATCGAGCAACAAGTTCCAGAGCCGAAGAAATCAAGGGGGCCGATTATTGAAGAGCTAGATCCT GACAACGAGAAAACTGAAGGAGATGAAGAGAAGAAAGAGAATCCTAGAAAACATGGTATGCGGAGCAAGGAGCCGTTTGTTGAGGACCCAGATGATGAAG CTGAAGTGAGAAAGAGCAAGCACTTGCAGTATAGAAATGATTATAGTAGATTCAATGGCATTGAGTCACAACCCCAAGGACGCAGGTTCACTTTTCAGAG CTCTACTGTCACTCATGGTGGTGCAAATGGAGCTTACTACACTTCTTCCATTACAAGGAGGGCAGGAAGTGATGGAGTGACTTTCGAAGAAAGCAAAGAA GCTAACAGTGCTACTGGCCAAGCAACTCACAGAGTGTCTAGAGGACTTCACAATAAGGGCCATAGCCTTACAAGGAAGCTTAAATCGGATGGTAGGGTGG ATACAATGCAGACATTGCACAATCTTAATGAAGATGAGCTCTCTGGTTTTGAAGAAGCTTGGAAGGGAAATGCTGGAAAGCATTTGCCTGGATGGACTGG AAGTTTCACTGGCATTGATAACATGGGGACTAGCAGCAGTGGACAGAATGCACAGGCAAGAAGAGGAGGTTGGGCTCTTCCTTCCACAGAAGGATCACAG CACTCTGAGAGAATGGTGCCAGACACCACGGTTGGGGCAGGATCATCACGCATACAGAAGTCAGGAAGGAGGAAAGGTTCATCAGACGTCAAAGACATGA ACGGTTATCCTCGATGGAAACCTAACAATTAA
AA sequence Show only first row Show all	>Potri.003G115400.2 pacid=42787432 polypeptide=Potri.003G115400.2.p locus=Potri.003G115400 ID=Potri.003G115400.2.v4.1 annot-version=v4.1 MQGGRGNRDPFFGNGGPFGGFGSQRSLLSGFFGGRDPFDDPFFTRPFGGLFESTFFGSSGNPFPNMHPSPFDNMHPSGYIEQQVPEPKKSRGPIIEELDP DNEKTEGDEEKKENPRKHGMRSKEPFVEDPDDEAEVRKSKHLQYRNDYSRFNGIESQPQGRRFTFQSSTVTHGGANGAYYTSSITRRAGSDGVTFEESKE ANSATGQATHRVSRGLHNKGHSLTRKLKSDGRVDTMQTLHNLNEDELSGFEEAWKGNAGKHLPGWTGSFTGIDNMGTSSSGQNAQARRGGWALPSTEGSQ HSERMVPDTTVGAGSSRIQKSGRRKGSSDVKDMNGYPRWKPNN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22740			glycine-rich protein (.1.2)		Potri.003G115400 [exp]	0	1
AT5G49220			Protein of unknown function (D...		Potri.010G000700 [exp]	1.00	0.9862
AT3G08970		TMS1, ATERDJ3A	THERMOSENSITIVE MALE STERILE 1...		Potri.016G120000 [exp]	2.44	0.9854
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Potri.009G015700 [exp]	2.64	0.9692	Pt-PM37.1
AT4G34100			RING/U-box superfamily protein...		Potri.001G304100 [exp]	2.82	0.9691
AT2G15560			Putative endonuclease or glyco...		Potri.009G100600 [exp]	5.09	0.9638
AT3G09350		Fes1A	Fes1A (.1.2.3)		Potri.006G088000 [exp]	5.29	0.9791
AT1G03070			Bax inhibitor-1 family protein...		Potri.002G049000 [exp]	5.47	0.9784
AT5G37670		HSP15.7CI	HSP20-like chaperones superfam...		Potri.017G130700 [exp]	5.47	0.9811
AT1G09140		ATSRP30.1, ATSR...	Serine/Arginine-Rich Protein S...		Potri.005G024600 [exp]	5.74	0.9673
AT5G35320			unknown protein		Potri.018G132600 [exp]	6.00	0.9640

Compare expression of checked genes

Potri.003G115400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.