Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12330 503 / 1e-175 unknown protein AT5G12900 243 / 6e-74 unknown protein AT3G60680 59 / 3e-09 Plant protein of unknown function (DUF641) (.1) AT2G45260 53 / 2e-07 Plant protein of unknown function (DUF641) (.1) AT5G58960 53 / 3e-07 GIL1 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT1G53380 52 / 6e-07 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT3G14870 51 / 2e-06 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT1G29300 46 / 4e-05 UNE1 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G117000 [exp] 766 / 0 AT1G12330 465 / 1e-160 unknown protein Potri.003G210200 [exp] 261 / 3e-79 AT5G12900 603 / 0.0 unknown protein Potri.001G016600 [exp] 249 / 6e-76 AT5G12900 555 / 0.0 unknown protein Potri.002G145000 [exp] 58 / 7e-09 AT3G60680 494 / 4e-172 Plant protein of unknown function (DUF641) (.1) Potri.002G145900 [exp] 55 / 9e-08 AT2G45260 692 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.014G066600 [exp] 53 / 2e-07 AT3G60680 522 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.009G041000 [exp] 52 / 6e-07 AT5G58960 466 / 2e-159 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.011G108000 [exp] 50 / 2e-06 AT1G53380 531 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.001G387700 [exp] 50 / 2e-06 AT1G53380 524 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024559 [exp] 538 / 0 AT1G12330 479 / 3e-166 unknown protein Lus10032197 [exp] 531 / 0 AT1G12330 476 / 2e-165 unknown protein Lus10004335 [exp] 500 / 1e-174 AT1G12330 468 / 7e-162 unknown protein Lus10028918 [exp] 409 / 7e-141 AT1G12330 399 / 3e-137 unknown protein Lus10031820 [exp] 191 / 5e-54 AT5G12900 454 / 2e-154 unknown protein Lus10031249 [exp] 187 / 2e-52 AT5G12900 448 / 1e-151 unknown protein Lus10009284 [exp] 60 / 2e-09 AT3G60680 541 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10016444 [exp] 55 / 1e-07 AT5G58960 635 / 0.0 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Lus10001989 [exp] 52 / 7e-07 AT2G45260 671 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10024190 [exp] 51 / 2e-06 AT2G45260 270 / 1e-86 Plant protein of unknown function (DUF641) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G115700.1 pacid=42786635 polypeptide=Potri.003G115700.1.p locus=Potri.003G115700 ID=Potri.003G115700.1.v4.1 annot-version=v4.1 ATGGCAATTTCATCTCCTCCTCCTCCTCCCTCTAAATCTCCTTCCTCTCCTCCACCACCACCAACAGTAGTACTCCCTCTTCAATCTCCTCATATTACTC CTATTCAAGAATGTGAAAGAGAAGAACAATATGATGAATTCAGTGAAGAGGGAAGCCAAACTACTACTAGCAAAGCAACACCAGTTAATTTTATAGACAA GAGAGCAACACCAAAGCACCATCCAACACCTCTCCGTGAAAAAAATGGCAAGCCGAGCGCCAAGAAACGACATGGTGATAGCAATGATAGAGATGGTGGC GGTGGTGGCGGTGGTGGTGGTGGTGGTTCAATTTCTTGTAACAAATGCCGTCCACATGCAAGAGAGAAGATCTCGGTGGTTCCCTTGGACACTAATGGCT TAAACAAGCATTCATCTATTGCAAGTCCTAATTGGATTTTCAAGTCCATATTTTCTTCATTGACTAGAAAGAGTCCAAAATCCACTGGTGATGTGTCAAT AGCAAGAGAAGAGCAATGGAAGATTGCAATAGCTGAGCTTTCTCACAAGTTGATCCAAGCAACAAGAAAGAGAGATGAAGCACTTCTTGAAACTTCAAGG CTCAAGTACTCAATGGCTGAACTTGAAAAGAAGCTTAACAAGCTTGAAATTTATTGCCATAATTTGAAGTCTGGACTTGATGAATGCAGCAGCAGCAACC CCCTTTATCAGATTGGAAAAGGTTACAATACTCACCAATATCAACAAAATGGTCTTATGGGGGTTAGTGAAAAAGTGATAGAGCAATTTTTGATTTCAGT ATCAGAAGCTAGGTCCTCTGTTAGGCTATTAAGCAGGTCACTTACTATGCAACTAAGGCACATGGGAGTAAAAGTTTACGAGAGAATATCTGTGTTGCTG CAACCTTATGATATAAAGATTTCATTCTCCAAGAATCCGAAAGGTGTGCTCTTTTACCTCGAGGCCTTGTTGAACAAAGCTTTCTTTGAAGATTTTGAAT CTGCTGGGTTCCAAAAGACATCTGTGAATCAAATATTGAACCCAATTGATAGATGTGAAGCAAACTACGCGTCATTTAACGTGCTTAGAGATTTGACATG GGAGGAGGTATTGAATCAAGGGACAAGGCATTTCAGTGAAGAGTTTAGCAAGTTTTGTGATAGGAAAATGAGTGAGATTGTGGCTATGTTGGGGTGGAAT AGAGCCTGGCCTGAGCCATTGTTGCAGGCATTCTTTGGTGCTTCTAAAAACATATGGTTGGTGCACCTTCTGGCCAATTCCGTGCACCCTGGCTTTCCAA TCTTCAGGGTGGATAAAGGGGTGAACTTCGACTCAATTTACATGGAGGATATGGATGGAGACAGGGCAAGGAAGTTGGTCCCAACCATGGTTCGGATCAT GGTAGCACCTGGGTTCTATGTTTATGATAACGTTGTCAAATGCAAGGTCCTTTGCAGGTACTGTAATCATAGTGTTAATAATGATTAG
AA sequence Show only first row Show all	>Potri.003G115700.1 pacid=42786635 polypeptide=Potri.003G115700.1.p locus=Potri.003G115700 ID=Potri.003G115700.1.v4.1 annot-version=v4.1 MAISSPPPPPSKSPSSPPPPPTVVLPLQSPHITPIQECEREEQYDEFSEEGSQTTTSKATPVNFIDKRATPKHHPTPLREKNGKPSAKKRHGDSNDRDGG GGGGGGGGGSISCNKCRPHAREKISVVPLDTNGLNKHSSIASPNWIFKSIFSSLTRKSPKSTGDVSIAREEQWKIAIAELSHKLIQATRKRDEALLETSR LKYSMAELEKKLNKLEIYCHNLKSGLDECSSSNPLYQIGKGYNTHQYQQNGLMGVSEKVIEQFLISVSEARSSVRLLSRSLTMQLRHMGVKVYERISVLL QPYDIKISFSKNPKGVLFYLEALLNKAFFEDFESAGFQKTSVNQILNPIDRCEANYASFNVLRDLTWEEVLNQGTRHFSEEFSKFCDRKMSEIVAMLGWN RAWPEPLLQAFFGASKNIWLVHLLANSVHPGFPIFRVDKGVNFDSIYMEDMDGDRARKLVPTMVRIMVAPGFYVYDNVVKCKVLCRYCNHSVNND

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12330			unknown protein		Potri.003G115700 [exp]	0	1
AT3G05975			Late embryogenesis abundant (L...		Potri.016G142200 [exp]	2.00	0.9634
AT1G75800			Pathogenesis-related thaumatin...		Potri.001G221100 [exp]	2.44	0.9574
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Potri.001G288401 [exp]	6.92	0.9492
AT3G49190			O-acyltransferase (WSD1-like) ...		Potri.007G139600 [exp]	12.36	0.9530
AT1G52827		ATCDT1	cadmium tolerance 1 (.1)		Potri.001G177333 [exp]	14.00	0.9516
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Potri.014G180300 [exp]	20.73	0.9509	CER1.1
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Potri.018G129800 [exp]	26.73	0.9394
					Potri.004G050600 [exp]	27.12	0.9346
AT3G29780		RALFL27	ralf-like 27 (.1)		Potri.017G098100 [exp]	28.28	0.9298
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.005G122600 [exp]	32.31	0.9497

Compare expression of checked genes

Potri.003G115700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.