Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	KEU.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12360 1083 / 0 KEU keule, Sec1/munc18-like (SM) proteins superfamily (.1) AT4G12120 909 / 0 ATSEC1B, SEC1B Sec1/munc18-like (SM) proteins superfamily (.1) AT1G02010 891 / 0 SEC1A secretory 1A (.1.2) AT1G77140 95 / 3e-20 ATVPS45, VPS45 vacuolar protein sorting 45 (.1) AT2G17980 90 / 1e-18 ATSLY1 Sec1/munc18-like (SM) proteins superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G116900 [exp] 1248 / 0 AT1G12360 1113 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Potri.014G069300 [exp] 914 / 0 AT1G02010 945 / 0.0 secretory 1A (.1.2) Potri.002G071600 [exp] 108 / 2e-24 AT1G77140 996 / 0.0 vacuolar protein sorting 45 (.1) Potri.005G188000 [exp] 103 / 8e-23 AT1G77140 999 / 0.0 vacuolar protein sorting 45 (.1) Potri.004G204400 [exp] 88 / 8e-18 AT2G17980 1013 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1) Potri.009G165300 [exp] 86 / 3e-17 AT2G17980 1003 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032196 [exp] 1104 / 0 AT1G12360 1031 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Lus10024558 [exp] 1066 / 0 AT1G12360 1034 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Lus10015870 [exp] 805 / 0 AT1G02010 909 / 0.0 secretory 1A (.1.2) Lus10009293 [exp] 767 / 0 AT1G02010 868 / 0.0 secretory 1A (.1.2) Lus10018921 [exp] 91 / 8e-19 AT1G77140 974 / 0.0 vacuolar protein sorting 45 (.1) Lus10028622 [exp] 91 / 1e-18 AT1G77140 977 / 0.0 vacuolar protein sorting 45 (.1) Lus10023936 [exp] 86 / 3e-17 AT2G17980 994 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1) Lus10014435 [exp] 85 / 7e-17 AT2G17980 989 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00995 [poplar] [flax] Sec1 Sec1 family
Representative CDS sequence Show only first row Show all	>Potri.003G115800.5 pacid=42785477 polypeptide=Potri.003G115800.5.p locus=Potri.003G115800 ID=Potri.003G115800.5.v4.1 annot-version=v4.1 ATGTCGTTCTCGGATTCTGATTCGTCGTCTGCTTACGGTGGCGACTACAGGAATTTTAGACAAATTAGCCGTGAACGTTTATTGCATGAAATGCTTCGAT CAGCCAAAACAGGGAACTCAAAATCAACTTGGAAGGTTCTCATCATGGACAGACTTACTGTGAAGATCATGTCATACTCATGCAAGATGGCTGATATCAC ACAGGAAGGAGTTTCATTGGTAGAAGACATATACAGAAGAAGGCAGCCGTTGCCCTCCATGGATGCTATATACTTCATCCAACCAACAAAAGAGAATGTT ATCATGTTCTTGTCAGACATGGCTGGGAAATCGCCTTTGTACAAAAAGGCATTTGTTTTCTTCAGTTCCCCTATATCAAGAGAACTGGTTTCTCATATCA AGAAAGATTCAAGTGTATTAACTCGCATAGGTGCATTGAGAGAGATGAATTTGGAGTATTTTGCTATAGATAGCCAGGGTTTTATTACTGACAATGAAAG GGCTTTAGAAGAACTTTTTGGGGATGATGAGGATAGTCACAAAGGTGATGCGTGTTTGAATGTGATGGCTTCTCGCATCGCTACAGTTTTTGCTTCACTA CGGGAATTTCCTTTTGTGAGATTTCGTGCTGCCAGGTCCCTTGATGTAACAACAATGACAACTTCCCGTGATCTAATTCCTACAAAGCTTGCTGCTAGAA TTTGGGATTCTCTAACACAATATAAGCAAAAGATTGAAAACTTTCCCCAGACAGAAACCTGTGAACTGCTCATCCTGGATAGATCTATAGATCAGATTGC TCCTGTCATACATGAGTGGACATATGATGCCATGTGCCATGATCTGTTGAATATGGAGGGAAATAAATATGTGCATGAGGTTCCTGGCAAAGCAGGTGGT CCACCTGAAAAAAAGGAAGTTCTTTTGGAGGAACATGATCCTGTTTGGCTTGAGCTTCGGCATGCACACATAGCATTTGCTAGTGAGCGGTTGCACGAGA AGATGACCAACTTTGTATCAAAAAATAAAGCTGCCAAAATCCAACATGGTTCAAGAGATGGTGGTGAACTTTCTACACGGGACTTGCAACAGATGGTTCA AGCATTGCCTCAATACAGTGAACAGATTGACAAGCTCTCTCTCCATGTAGAGATTGCTGGAAAAATTAATAGAATTATCAGGGAGTTGGGGCTTCGAGAG CTTGGTCAACTAGAGCAGGACCTGGTTTTTGGAGATGCAGGAATGAAAGATGTTATTAAATTTCTGACTACGAAAGAGGATACAACTCGTGAAAATAAGT TGCGGTTGTTGATGATTCTTGCCGCTGTTTTTCCTGAGAAGCTTGAGGGTGAAAGGGGTCTTAATATAATGAAGCTGGCAAGATTACCGCAGGATGACAT GAATGCTGTGAATAATATGAGATTGCTTGCGGGGGCATCAGATACCAAAAAAAGATCAACTGGTGCTTTTTCCCTGAAGTTTGATATTCATAAGAAGAAG CGTGCTGCCAGGAAAGACCGCACCGGTGAGGAAGAAACAACATGGCAGTTGTCCCGCTTTTACCCCATGATAGAGGAACTTATTGATAAACTTAACAAAG GAGAACTGTCCAAGGATGAATATCCATGTATGAATGACCCAAGCCCATCTTTCCATGGGACATCCCAGTCTACACCAATGCATCATGTTCCCGCACCCCA TTCAATGAGATCAAAACGGACACCAACATGGGCTCGACCACGGAACTCCGATGATGGTTATTCAAGTGATTCAATTCTAAGACACGCATCTAGTGATTTT AAAAAGATGGGCCAGCGTATTTTTGTTTTCATTGTAGGTGGAGCTACGAGATCTGAGCTAAGAGTTTGCCACAAGCTCACGAGCAAGTTACAGAGGGAAG TAATTTTGGGTTCTTCAAGCCTTGATGATCCTCCACAATTTATGACGAAGCTCAAACTGCTGACAGCAAATGAACTTTCGCTGGATGATCTGCAGATATA A
AA sequence Show only first row Show all	>Potri.003G115800.5 pacid=42785477 polypeptide=Potri.003G115800.5.p locus=Potri.003G115800 ID=Potri.003G115800.5.v4.1 annot-version=v4.1 MSFSDSDSSSAYGGDYRNFRQISRERLLHEMLRSAKTGNSKSTWKVLIMDRLTVKIMSYSCKMADITQEGVSLVEDIYRRRQPLPSMDAIYFIQPTKENV IMFLSDMAGKSPLYKKAFVFFSSPISRELVSHIKKDSSVLTRIGALREMNLEYFAIDSQGFITDNERALEELFGDDEDSHKGDACLNVMASRIATVFASL REFPFVRFRAARSLDVTTMTTSRDLIPTKLAARIWDSLTQYKQKIENFPQTETCELLILDRSIDQIAPVIHEWTYDAMCHDLLNMEGNKYVHEVPGKAGG PPEKKEVLLEEHDPVWLELRHAHIAFASERLHEKMTNFVSKNKAAKIQHGSRDGGELSTRDLQQMVQALPQYSEQIDKLSLHVEIAGKINRIIRELGLRE LGQLEQDLVFGDAGMKDVIKFLTTKEDTTRENKLRLLMILAAVFPEKLEGERGLNIMKLARLPQDDMNAVNNMRLLAGASDTKKRSTGAFSLKFDIHKKK RAARKDRTGEEETTWQLSRFYPMIEELIDKLNKGELSKDEYPCMNDPSPSFHGTSQSTPMHHVPAPHSMRSKRTPTWARPRNSDDGYSSDSILRHASSDF KKMGQRIFVFIVGGATRSELRVCHKLTSKLQREVILGSSSLDDPPQFMTKLKLLTANELSLDDLQI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Potri.003G115800 [exp]	0	1	KEU.1
AT5G28040	GeBP		DNA-binding storekeeper protei...		Potri.009G056400 [exp]	2.00	0.8409
AT4G13980	HSF	AT-HSFA5	HEAT SHOCK TRANSCRIPTION FACTO...		Potri.017G059600 [exp]	5.83	0.8334	Pt-HSFA5.2
AT5G21990		OEP61, TPR7	tetratricopeptide repeat 7, ou...		Potri.009G151700 [exp]	13.96	0.8274
AT4G24200			Transcription elongation facto...		Potri.005G241400 [exp]	20.85	0.8195
AT1G34320			Protein of unknown function (D...		Potri.019G001500 [exp]	23.06	0.8220
AT1G44130			Eukaryotic aspartyl protease f...		Potri.002G081400 [exp]	23.81	0.7889
AT4G28300			Protein of unknown function (D...		Potri.013G131600 [exp]	25.88	0.8100
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Potri.002G061300 [exp]	30.39	0.8015
AT1G21380			Target of Myb protein 1 (.1)		Potri.002G075500 [exp]	30.59	0.8039
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Potri.010G043900 [exp]	30.88	0.8116

Compare expression of checked genes

Potri.003G115800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.